Actual source code: amd.c

      1: #include <petscmat.h>
      2: #include <petsc/private/matorderimpl.h>
      3: #include <amd.h>

      5: #if defined(PETSC_USE_64BIT_INDICES)
      6:   #define amd_AMD_defaults amd_l_defaults
      7:   /* the type casts are needed because PetscInt is long long while SuiteSparse_long is long and compilers warn even when they are identical */
      8:   #define amd_AMD_order(a, b, c, d, e, f) amd_l_order((SuiteSparse_long)a, (SuiteSparse_long *)b, (SuiteSparse_long *)c, (SuiteSparse_long *)d, e, f)
      9: #else
     10:   #define amd_AMD_defaults amd_defaults
     11:   #define amd_AMD_order    amd_order
     12: #endif

     14: /*
     15:     MatGetOrdering_AMD - Find the Approximate Minimum Degree ordering

     17:     This provides an interface to Tim Davis' AMD package (used by UMFPACK, CHOLMOD, MATLAB, etc).
     18: */
     19: PETSC_INTERN PetscErrorCode MatGetOrdering_AMD(Mat mat, MatOrderingType type, IS *row, IS *col)
     20: {
     21:   PetscInt        nrow, *perm;
     22:   const PetscInt *ia, *ja;
     23:   int             status;
     24:   PetscReal       val;
     25:   double          Control[AMD_CONTROL], Info[AMD_INFO];
     26:   PetscBool       tval, done;

     28:   PetscFunctionBegin;
     29:   /*
     30:      AMD does not require that the matrix be symmetric (it does so internally,
     31:      at least in so far as computing orderings for A+A^T.
     32:   */
     33:   PetscCall(MatGetRowIJ(mat, 0, PETSC_FALSE, PETSC_TRUE, &nrow, &ia, &ja, &done));
     34:   PetscCheck(done, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot get rows for matrix type %s", ((PetscObject)mat)->type_name);

     36:   amd_AMD_defaults(Control);
     37:   PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "AMD Options", "Mat");
     38:   /*
     39:     We have to use temporary values here because AMD always uses double, even though PetscReal may be single
     40:   */
     41:   val = (PetscReal)Control[AMD_DENSE];
     42:   PetscCall(PetscOptionsReal("-mat_ordering_amd_dense", "threshold for \"dense\" rows/columns", "None", val, &val, NULL));
     43:   Control[AMD_DENSE] = (double)val;

     45:   tval = (PetscBool)Control[AMD_AGGRESSIVE];
     46:   PetscCall(PetscOptionsBool("-mat_ordering_amd_aggressive", "use aggressive absorption", "None", tval, &tval, NULL));
     47:   Control[AMD_AGGRESSIVE] = (double)tval;

     49:   PetscOptionsEnd();

     51:   PetscCall(PetscMalloc1(nrow, &perm));
     52:   status = amd_AMD_order(nrow, ia, ja, perm, Control, Info);
     53:   switch (status) {
     54:   case AMD_OK:
     55:     break;
     56:   case AMD_OK_BUT_JUMBLED:
     57:     /* The result is fine, but PETSc matrices are supposed to satisfy stricter preconditions, so PETSc considers a
     58:     * matrix that triggers this error condition to be invalid.
     59:     */
     60:     SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "According to AMD, the matrix has unsorted and/or duplicate row indices");
     61:   case AMD_INVALID:
     62:     amd_info(Info);
     63:     SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "According to AMD, the matrix is invalid");
     64:   case AMD_OUT_OF_MEMORY:
     65:     SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_MEM, "AMD could not compute ordering");
     66:   default:
     67:     SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_LIB, "Unexpected return value");
     68:   }
     69:   PetscCall(MatRestoreRowIJ(mat, 0, PETSC_FALSE, PETSC_TRUE, NULL, &ia, &ja, &done));

     71:   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nrow, perm, PETSC_COPY_VALUES, row));
     72:   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nrow, perm, PETSC_OWN_POINTER, col));
     73:   PetscFunctionReturn(PETSC_SUCCESS);
     74: }