Actual source code: sbaij.c

      1: /*
      2:     Defines the basic matrix operations for the SBAIJ (compressed row)
      3:   matrix storage format.
      4: */
      5: #include <../src/mat/impls/baij/seq/baij.h>
      6: #include <../src/mat/impls/sbaij/seq/sbaij.h>
      7: #include <petscblaslapack.h>

      9: #include <../src/mat/impls/sbaij/seq/relax.h>
     10: #define USESHORT
     11: #include <../src/mat/impls/sbaij/seq/relax.h>

     13: /* defines MatSetValues_Seq_Hash(), MatAssemblyEnd_Seq_Hash(), MatSetUp_Seq_Hash() */
     14: #define TYPE SBAIJ
     15: #define TYPE_SBAIJ
     16: #define TYPE_BS
     17: #include "../src/mat/impls/aij/seq/seqhashmatsetvalues.h"
     18: #undef TYPE_BS
     19: #define TYPE_BS _BS
     20: #define TYPE_BS_ON
     21: #include "../src/mat/impls/aij/seq/seqhashmatsetvalues.h"
     22: #undef TYPE_BS
     23: #undef TYPE_SBAIJ
     24: #include "../src/mat/impls/aij/seq/seqhashmat.h"
     25: #undef TYPE
     26: #undef TYPE_BS_ON

     28: #if defined(PETSC_HAVE_ELEMENTAL)
     29: PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
     30: #endif
     31: #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
     32: PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
     33: #endif
     34: PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat, MatType, MatReuse, Mat *);

     36: MatGetDiagonalMarkers(SeqSBAIJ, A->rmap->bs)

     38: static PetscErrorCode MatGetRowIJ_SeqSBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool blockcompressed, PetscInt *nn, const PetscInt *inia[], const PetscInt *inja[], PetscBool *done)
     39: {
     40:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
     41:   PetscInt      i, j, n = a->mbs, nz = a->i[n], *tia, *tja, bs = A->rmap->bs, k, l, cnt;
     42:   PetscInt    **ia = (PetscInt **)inia, **ja = (PetscInt **)inja;

     44:   PetscFunctionBegin;
     45:   *nn = n;
     46:   if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
     47:   if (symmetric) {
     48:     PetscCall(MatToSymmetricIJ_SeqAIJ(n, a->i, a->j, PETSC_FALSE, 0, 0, &tia, &tja));
     49:     nz = tia[n];
     50:   } else {
     51:     tia = a->i;
     52:     tja = a->j;
     53:   }

     55:   if (!blockcompressed && bs > 1) {
     56:     (*nn) *= bs;
     57:     /* malloc & create the natural set of indices */
     58:     PetscCall(PetscMalloc1((n + 1) * bs, ia));
     59:     if (n) {
     60:       (*ia)[0] = oshift;
     61:       for (j = 1; j < bs; j++) (*ia)[j] = (tia[1] - tia[0]) * bs + (*ia)[j - 1];
     62:     }

     64:     for (i = 1; i < n; i++) {
     65:       (*ia)[i * bs] = (tia[i] - tia[i - 1]) * bs + (*ia)[i * bs - 1];
     66:       for (j = 1; j < bs; j++) (*ia)[i * bs + j] = (tia[i + 1] - tia[i]) * bs + (*ia)[i * bs + j - 1];
     67:     }
     68:     if (n) (*ia)[n * bs] = (tia[n] - tia[n - 1]) * bs + (*ia)[n * bs - 1];

     70:     if (inja) {
     71:       PetscCall(PetscMalloc1(nz * bs * bs, ja));
     72:       cnt = 0;
     73:       for (i = 0; i < n; i++) {
     74:         for (j = 0; j < bs; j++) {
     75:           for (k = tia[i]; k < tia[i + 1]; k++) {
     76:             for (l = 0; l < bs; l++) (*ja)[cnt++] = bs * tja[k] + l;
     77:           }
     78:         }
     79:       }
     80:     }

     82:     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
     83:       PetscCall(PetscFree(tia));
     84:       PetscCall(PetscFree(tja));
     85:     }
     86:   } else if (oshift == 1) {
     87:     if (symmetric) {
     88:       nz = tia[A->rmap->n / bs];
     89:       /*  add 1 to i and j indices */
     90:       for (i = 0; i < A->rmap->n / bs + 1; i++) tia[i] = tia[i] + 1;
     91:       *ia = tia;
     92:       if (ja) {
     93:         for (i = 0; i < nz; i++) tja[i] = tja[i] + 1;
     94:         *ja = tja;
     95:       }
     96:     } else {
     97:       nz = a->i[A->rmap->n / bs];
     98:       /* malloc space and  add 1 to i and j indices */
     99:       PetscCall(PetscMalloc1(A->rmap->n / bs + 1, ia));
    100:       for (i = 0; i < A->rmap->n / bs + 1; i++) (*ia)[i] = a->i[i] + 1;
    101:       if (ja) {
    102:         PetscCall(PetscMalloc1(nz, ja));
    103:         for (i = 0; i < nz; i++) (*ja)[i] = a->j[i] + 1;
    104:       }
    105:     }
    106:   } else {
    107:     *ia = tia;
    108:     if (ja) *ja = tja;
    109:   }
    110:   PetscFunctionReturn(PETSC_SUCCESS);
    111: }

    113: static PetscErrorCode MatRestoreRowIJ_SeqSBAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool blockcompressed, PetscInt *nn, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
    114: {
    115:   PetscFunctionBegin;
    116:   if (!ia) PetscFunctionReturn(PETSC_SUCCESS);
    117:   if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
    118:     PetscCall(PetscFree(*ia));
    119:     if (ja) PetscCall(PetscFree(*ja));
    120:   }
    121:   PetscFunctionReturn(PETSC_SUCCESS);
    122: }

    124: PetscErrorCode MatDestroy_SeqSBAIJ(Mat A)
    125: {
    126:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

    128:   PetscFunctionBegin;
    129:   if (A->hash_active) {
    130:     PetscInt bs;
    131:     A->ops[0] = a->cops;
    132:     PetscCall(PetscHMapIJVDestroy(&a->ht));
    133:     PetscCall(MatGetBlockSize(A, &bs));
    134:     if (bs > 1) PetscCall(PetscHSetIJDestroy(&a->bht));
    135:     PetscCall(PetscFree(a->dnz));
    136:     PetscCall(PetscFree(a->bdnz));
    137:     A->hash_active = PETSC_FALSE;
    138:   }
    139:   PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->N, a->nz));
    140:   PetscCall(MatSeqXAIJFreeAIJ(A, &a->a, &a->j, &a->i));
    141:   PetscCall(PetscFree(a->diag));
    142:   PetscCall(ISDestroy(&a->row));
    143:   PetscCall(ISDestroy(&a->col));
    144:   PetscCall(ISDestroy(&a->icol));
    145:   PetscCall(PetscFree(a->idiag));
    146:   PetscCall(PetscFree(a->inode.size_csr));
    147:   if (a->free_imax_ilen) PetscCall(PetscFree2(a->imax, a->ilen));
    148:   PetscCall(PetscFree(a->solve_work));
    149:   PetscCall(PetscFree(a->sor_work));
    150:   PetscCall(PetscFree(a->solves_work));
    151:   PetscCall(PetscFree(a->mult_work));
    152:   PetscCall(PetscFree(a->saved_values));
    153:   if (a->free_jshort) PetscCall(PetscFree(a->jshort));
    154:   PetscCall(PetscFree(a->inew));
    155:   PetscCall(MatDestroy(&a->parent));
    156:   PetscCall(PetscFree(A->data));

    158:   PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL));
    159:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJGetArray_C", NULL));
    160:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJRestoreArray_C", NULL));
    161:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL));
    162:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL));
    163:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJSetColumnIndices_C", NULL));
    164:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsbaij_seqaij_C", NULL));
    165:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsbaij_seqbaij_C", NULL));
    166:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJSetPreallocation_C", NULL));
    167:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSBAIJSetPreallocationCSR_C", NULL));
    168: #if defined(PETSC_HAVE_ELEMENTAL)
    169:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsbaij_elemental_C", NULL));
    170: #endif
    171: #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
    172:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsbaij_scalapack_C", NULL));
    173: #endif
    174:   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", NULL));
    175:   PetscFunctionReturn(PETSC_SUCCESS);
    176: }

    178: static PetscErrorCode MatSetOption_SeqSBAIJ(Mat A, MatOption op, PetscBool flg)
    179: {
    180:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

    182:   PetscFunctionBegin;
    183:   switch (op) {
    184:   case MAT_ROW_ORIENTED:
    185:     a->roworiented = flg;
    186:     break;
    187:   case MAT_KEEP_NONZERO_PATTERN:
    188:     a->keepnonzeropattern = flg;
    189:     break;
    190:   case MAT_NEW_NONZERO_LOCATIONS:
    191:     a->nonew = (flg ? 0 : 1);
    192:     break;
    193:   case MAT_NEW_NONZERO_LOCATION_ERR:
    194:     a->nonew = (flg ? -1 : 0);
    195:     break;
    196:   case MAT_NEW_NONZERO_ALLOCATION_ERR:
    197:     a->nonew = (flg ? -2 : 0);
    198:     break;
    199:   case MAT_UNUSED_NONZERO_LOCATION_ERR:
    200:     a->nounused = (flg ? -1 : 0);
    201:     break;
    202:   case MAT_HERMITIAN:
    203:     if (PetscDefined(USE_COMPLEX) && flg) { /* disable transpose ops */
    204:       PetscInt bs;

    206:       PetscCall(MatGetBlockSize(A, &bs));
    207:       PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for Hermitian with block size greater than 1");
    208:       A->ops->multtranspose    = NULL;
    209:       A->ops->multtransposeadd = NULL;
    210:     }
    211:     break;
    212:   case MAT_SYMMETRIC:
    213:   case MAT_SPD:
    214:     if (PetscDefined(USE_COMPLEX) && flg) { /* An Hermitian and symmetric matrix has zero imaginary part (restore back transpose ops) */
    215:       A->ops->multtranspose    = A->ops->mult;
    216:       A->ops->multtransposeadd = A->ops->multadd;
    217:     }
    218:     break;
    219:   case MAT_IGNORE_LOWER_TRIANGULAR:
    220:     a->ignore_ltriangular = flg;
    221:     break;
    222:   case MAT_ERROR_LOWER_TRIANGULAR:
    223:     a->ignore_ltriangular = flg;
    224:     break;
    225:   case MAT_GETROW_UPPERTRIANGULAR:
    226:     a->getrow_utriangular = flg;
    227:     break;
    228:   default:
    229:     break;
    230:   }
    231:   PetscFunctionReturn(PETSC_SUCCESS);
    232: }

    234: PetscErrorCode MatGetRow_SeqSBAIJ(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
    235: {
    236:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

    238:   PetscFunctionBegin;
    239:   PetscCheck(!A || a->getrow_utriangular, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatGetRow is not supported for SBAIJ matrix format. Getting the upper triangular part of row, run with -mat_getrow_uppertriangular, call MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or MatGetRowUpperTriangular()");

    241:   /* Get the upper triangular part of the row */
    242:   PetscCall(MatGetRow_SeqBAIJ_private(A, row, nz, idx, v, a->i, a->j, a->a));
    243:   PetscFunctionReturn(PETSC_SUCCESS);
    244: }

    246: PetscErrorCode MatRestoreRow_SeqSBAIJ(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
    247: {
    248:   PetscFunctionBegin;
    249:   if (idx) PetscCall(PetscFree(*idx));
    250:   if (v) PetscCall(PetscFree(*v));
    251:   PetscFunctionReturn(PETSC_SUCCESS);
    252: }

    254: static PetscErrorCode MatGetRowUpperTriangular_SeqSBAIJ(Mat A)
    255: {
    256:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

    258:   PetscFunctionBegin;
    259:   a->getrow_utriangular = PETSC_TRUE;
    260:   PetscFunctionReturn(PETSC_SUCCESS);
    261: }

    263: static PetscErrorCode MatRestoreRowUpperTriangular_SeqSBAIJ(Mat A)
    264: {
    265:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

    267:   PetscFunctionBegin;
    268:   a->getrow_utriangular = PETSC_FALSE;
    269:   PetscFunctionReturn(PETSC_SUCCESS);
    270: }

    272: static PetscErrorCode MatTranspose_SeqSBAIJ(Mat A, MatReuse reuse, Mat *B)
    273: {
    274:   PetscFunctionBegin;
    275:   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
    276:   if (reuse == MAT_INITIAL_MATRIX) {
    277:     PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
    278:   } else if (reuse == MAT_REUSE_MATRIX) {
    279:     PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
    280:   }
    281:   PetscFunctionReturn(PETSC_SUCCESS);
    282: }

    284: static PetscErrorCode MatView_SeqSBAIJ_ASCII(Mat A, PetscViewer viewer)
    285: {
    286:   Mat_SeqSBAIJ     *a = (Mat_SeqSBAIJ *)A->data;
    287:   PetscInt          i, j, bs = A->rmap->bs, k, l, bs2 = a->bs2;
    288:   PetscViewerFormat format;
    289:   const PetscInt   *diag;
    290:   const char       *matname;

    292:   PetscFunctionBegin;
    293:   PetscCall(PetscViewerGetFormat(viewer, &format));
    294:   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
    295:   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
    296:     Mat aij;

    298:     if (A->factortype && bs > 1) {
    299:       PetscCall(PetscPrintf(PETSC_COMM_SELF, "Warning: matrix is factored with bs>1. MatView() with PETSC_VIEWER_ASCII_MATLAB is not supported and ignored!\n"));
    300:       PetscFunctionReturn(PETSC_SUCCESS);
    301:     }
    302:     PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &aij));
    303:     if (((PetscObject)A)->name) PetscCall(PetscObjectGetName((PetscObject)A, &matname));
    304:     if (((PetscObject)A)->name) PetscCall(PetscObjectSetName((PetscObject)aij, matname));
    305:     PetscCall(MatView_SeqAIJ(aij, viewer));
    306:     PetscCall(MatDestroy(&aij));
    307:   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
    308:     Mat B;

    310:     PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &B));
    311:     if (((PetscObject)A)->name) PetscCall(PetscObjectGetName((PetscObject)A, &matname));
    312:     if (((PetscObject)A)->name) PetscCall(PetscObjectSetName((PetscObject)B, matname));
    313:     PetscCall(MatView_SeqAIJ(B, viewer));
    314:     PetscCall(MatDestroy(&B));
    315:   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
    316:     PetscFunctionReturn(PETSC_SUCCESS);
    317:   } else {
    318:     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
    319:     if (A->factortype) { /* for factored matrix */
    320:       PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "matrix is factored with bs>1. Not implemented yet");
    321:       PetscCall(MatGetDiagonalMarkers_SeqSBAIJ(A, &diag, NULL));
    322:       for (i = 0; i < a->mbs; i++) { /* for row block i */
    323:         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
    324:         /* diagonal entry */
    325: #if defined(PETSC_USE_COMPLEX)
    326:         if (PetscImaginaryPart(a->a[diag[i]]) > 0.0) {
    327:           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", a->j[diag[i]], (double)PetscRealPart(1.0 / a->a[diag[i]]), (double)PetscImaginaryPart(1.0 / a->a[diag[i]])));
    328:         } else if (PetscImaginaryPart(a->a[diag[i]]) < 0.0) {
    329:           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i) ", a->j[diag[i]], (double)PetscRealPart(1.0 / a->a[diag[i]]), -(double)PetscImaginaryPart(1.0 / a->a[diag[i]])));
    330:         } else {
    331:           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->j[diag[i]], (double)PetscRealPart(1.0 / a->a[diag[i]])));
    332:         }
    333: #else
    334:         PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->j[diag[i]], (double)(1 / a->a[diag[i]])));
    335: #endif
    336:         /* off-diagonal entries */
    337:         for (k = a->i[i]; k < a->i[i + 1] - 1; k++) {
    338: #if defined(PETSC_USE_COMPLEX)
    339:           if (PetscImaginaryPart(a->a[k]) > 0.0) {
    340:             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", bs * a->j[k], (double)PetscRealPart(a->a[k]), (double)PetscImaginaryPart(a->a[k])));
    341:           } else if (PetscImaginaryPart(a->a[k]) < 0.0) {
    342:             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i) ", bs * a->j[k], (double)PetscRealPart(a->a[k]), -(double)PetscImaginaryPart(a->a[k])));
    343:           } else {
    344:             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k], (double)PetscRealPart(a->a[k])));
    345:           }
    346: #else
    347:           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->j[k], (double)a->a[k]));
    348: #endif
    349:         }
    350:         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
    351:       }

    353:     } else {                         /* for non-factored matrix */
    354:       for (i = 0; i < a->mbs; i++) { /* for row block i */
    355:         for (j = 0; j < bs; j++) {   /* for row bs*i + j */
    356:           PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i * bs + j));
    357:           for (k = a->i[i]; k < a->i[i + 1]; k++) { /* for column block */
    358:             for (l = 0; l < bs; l++) {              /* for column */
    359: #if defined(PETSC_USE_COMPLEX)
    360:               if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) > 0.0) {
    361:                 PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), (double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j])));
    362:               } else if (PetscImaginaryPart(a->a[bs2 * k + l * bs + j]) < 0.0) {
    363:                 PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j]), -(double)PetscImaginaryPart(a->a[bs2 * k + l * bs + j])));
    364:               } else {
    365:                 PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)PetscRealPart(a->a[bs2 * k + l * bs + j])));
    366:               }
    367: #else
    368:               PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", bs * a->j[k] + l, (double)a->a[bs2 * k + l * bs + j]));
    369: #endif
    370:             }
    371:           }
    372:           PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
    373:         }
    374:       }
    375:     }
    376:     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
    377:   }
    378:   PetscCall(PetscViewerFlush(viewer));
    379:   PetscFunctionReturn(PETSC_SUCCESS);
    380: }

    382: #include <petscdraw.h>
    383: static PetscErrorCode MatView_SeqSBAIJ_Draw_Zoom(PetscDraw draw, void *Aa)
    384: {
    385:   Mat           A = (Mat)Aa;
    386:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
    387:   PetscInt      row, i, j, k, l, mbs = a->mbs, bs = A->rmap->bs, bs2 = a->bs2;
    388:   PetscReal     xl, yl, xr, yr, x_l, x_r, y_l, y_r;
    389:   MatScalar    *aa;
    390:   PetscViewer   viewer;
    391:   int           color;

    393:   PetscFunctionBegin;
    394:   PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
    395:   PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));

    397:   /* loop over matrix elements drawing boxes */

    399:   PetscDrawCollectiveBegin(draw);
    400:   PetscCall(PetscDrawString(draw, .3 * (xl + xr), .3 * (yl + yr), PETSC_DRAW_BLACK, "symmetric"));
    401:   /* Blue for negative, Cyan for zero and  Red for positive */
    402:   color = PETSC_DRAW_BLUE;
    403:   for (i = 0, row = 0; i < mbs; i++, row += bs) {
    404:     for (j = a->i[i]; j < a->i[i + 1]; j++) {
    405:       y_l = A->rmap->N - row - 1.0;
    406:       y_r = y_l + 1.0;
    407:       x_l = a->j[j] * bs;
    408:       x_r = x_l + 1.0;
    409:       aa  = a->a + j * bs2;
    410:       for (k = 0; k < bs; k++) {
    411:         for (l = 0; l < bs; l++) {
    412:           if (PetscRealPart(*aa++) >= 0.) continue;
    413:           PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
    414:         }
    415:       }
    416:     }
    417:   }
    418:   color = PETSC_DRAW_CYAN;
    419:   for (i = 0, row = 0; i < mbs; i++, row += bs) {
    420:     for (j = a->i[i]; j < a->i[i + 1]; j++) {
    421:       y_l = A->rmap->N - row - 1.0;
    422:       y_r = y_l + 1.0;
    423:       x_l = a->j[j] * bs;
    424:       x_r = x_l + 1.0;
    425:       aa  = a->a + j * bs2;
    426:       for (k = 0; k < bs; k++) {
    427:         for (l = 0; l < bs; l++) {
    428:           if (PetscRealPart(*aa++) != 0.) continue;
    429:           PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
    430:         }
    431:       }
    432:     }
    433:   }
    434:   color = PETSC_DRAW_RED;
    435:   for (i = 0, row = 0; i < mbs; i++, row += bs) {
    436:     for (j = a->i[i]; j < a->i[i + 1]; j++) {
    437:       y_l = A->rmap->N - row - 1.0;
    438:       y_r = y_l + 1.0;
    439:       x_l = a->j[j] * bs;
    440:       x_r = x_l + 1.0;
    441:       aa  = a->a + j * bs2;
    442:       for (k = 0; k < bs; k++) {
    443:         for (l = 0; l < bs; l++) {
    444:           if (PetscRealPart(*aa++) <= 0.) continue;
    445:           PetscCall(PetscDrawRectangle(draw, x_l + k, y_l - l, x_r + k, y_r - l, color, color, color, color));
    446:         }
    447:       }
    448:     }
    449:   }
    450:   PetscDrawCollectiveEnd(draw);
    451:   PetscFunctionReturn(PETSC_SUCCESS);
    452: }

    454: static PetscErrorCode MatView_SeqSBAIJ_Draw(Mat A, PetscViewer viewer)
    455: {
    456:   PetscReal xl, yl, xr, yr, w, h;
    457:   PetscDraw draw;
    458:   PetscBool isnull;

    460:   PetscFunctionBegin;
    461:   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
    462:   PetscCall(PetscDrawIsNull(draw, &isnull));
    463:   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);

    465:   xr = A->rmap->N;
    466:   yr = A->rmap->N;
    467:   h  = yr / 10.0;
    468:   w  = xr / 10.0;
    469:   xr += w;
    470:   yr += h;
    471:   xl = -w;
    472:   yl = -h;
    473:   PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
    474:   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
    475:   PetscCall(PetscDrawZoom(draw, MatView_SeqSBAIJ_Draw_Zoom, A));
    476:   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
    477:   PetscCall(PetscDrawSave(draw));
    478:   PetscFunctionReturn(PETSC_SUCCESS);
    479: }

    481: /* Used for both MPIBAIJ and MPISBAIJ matrices */
    482: #define MatView_SeqSBAIJ_Binary MatView_SeqBAIJ_Binary

    484: PetscErrorCode MatView_SeqSBAIJ(Mat A, PetscViewer viewer)
    485: {
    486:   PetscBool isascii, isbinary, isdraw;

    488:   PetscFunctionBegin;
    489:   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
    490:   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
    491:   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
    492:   if (isascii) {
    493:     PetscCall(MatView_SeqSBAIJ_ASCII(A, viewer));
    494:   } else if (isbinary) {
    495:     PetscCall(MatView_SeqSBAIJ_Binary(A, viewer));
    496:   } else if (isdraw) {
    497:     PetscCall(MatView_SeqSBAIJ_Draw(A, viewer));
    498:   } else {
    499:     Mat         B;
    500:     const char *matname;
    501:     PetscCall(MatConvert(A, MATSEQAIJ, MAT_INITIAL_MATRIX, &B));
    502:     if (((PetscObject)A)->name) PetscCall(PetscObjectGetName((PetscObject)A, &matname));
    503:     if (((PetscObject)A)->name) PetscCall(PetscObjectSetName((PetscObject)B, matname));
    504:     PetscCall(MatView(B, viewer));
    505:     PetscCall(MatDestroy(&B));
    506:   }
    507:   PetscFunctionReturn(PETSC_SUCCESS);
    508: }

    510: PetscErrorCode MatGetValues_SeqSBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[])
    511: {
    512:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
    513:   PetscInt     *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j;
    514:   PetscInt     *ai = a->i, *ailen = a->ilen;
    515:   PetscInt      brow, bcol, ridx, cidx, bs = A->rmap->bs, bs2 = a->bs2;
    516:   MatScalar    *ap, *aa = a->a;

    518:   PetscFunctionBegin;
    519:   for (k = 0; k < m; k++) { /* loop over rows */
    520:     row  = im[k];
    521:     brow = row / bs;
    522:     if (row < 0) {
    523:       v += n;
    524:       continue;
    525:     } /* negative row */
    526:     PetscCheck(row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->N - 1);
    527:     rp   = aj + ai[brow];
    528:     ap   = aa + bs2 * ai[brow];
    529:     nrow = ailen[brow];
    530:     for (l = 0; l < n; l++) { /* loop over columns */
    531:       if (in[l] < 0) {
    532:         v++;
    533:         continue;
    534:       } /* negative column */
    535:       PetscCheck(in[l] < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[l], A->cmap->n - 1);
    536:       col  = in[l];
    537:       bcol = col / bs;
    538:       cidx = col % bs;
    539:       ridx = row % bs;
    540:       high = nrow;
    541:       low  = 0; /* assume unsorted */
    542:       while (high - low > 5) {
    543:         t = (low + high) / 2;
    544:         if (rp[t] > bcol) high = t;
    545:         else low = t;
    546:       }
    547:       for (i = low; i < high; i++) {
    548:         if (rp[i] > bcol) break;
    549:         if (rp[i] == bcol) {
    550:           *v++ = ap[bs2 * i + bs * cidx + ridx];
    551:           goto finished;
    552:         }
    553:       }
    554:       *v++ = 0.0;
    555:     finished:;
    556:     }
    557:   }
    558:   PetscFunctionReturn(PETSC_SUCCESS);
    559: }

    561: static PetscErrorCode MatPermute_SeqSBAIJ(Mat A, IS rowp, IS colp, Mat *B)
    562: {
    563:   Mat       C;
    564:   PetscBool flg = (PetscBool)(rowp == colp);

    566:   PetscFunctionBegin;
    567:   PetscCall(MatConvert(A, MATSEQBAIJ, MAT_INITIAL_MATRIX, &C));
    568:   PetscCall(MatPermute(C, rowp, colp, B));
    569:   PetscCall(MatDestroy(&C));
    570:   if (!flg) PetscCall(ISEqual(rowp, colp, &flg));
    571:   if (flg) PetscCall(MatConvert(*B, MATSEQSBAIJ, MAT_INPLACE_MATRIX, B));
    572:   PetscFunctionReturn(PETSC_SUCCESS);
    573: }

    575: PetscErrorCode MatSetValuesBlocked_SeqSBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
    576: {
    577:   Mat_SeqSBAIJ      *a = (Mat_SeqSBAIJ *)A->data;
    578:   PetscInt          *rp, k, low, high, t, ii, jj, row, nrow, i, col, l, rmax, N, lastcol = -1;
    579:   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
    580:   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs, stepval;
    581:   PetscBool          roworiented = a->roworiented;
    582:   const PetscScalar *value       = v;
    583:   MatScalar         *ap, *aa = a->a, *bap;

    585:   PetscFunctionBegin;
    586:   if (roworiented) stepval = (n - 1) * bs;
    587:   else stepval = (m - 1) * bs;
    588:   for (k = 0; k < m; k++) { /* loop over added rows */
    589:     row = im[k];
    590:     if (row < 0) continue;
    591:     PetscCheck(row < a->mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block index row too large %" PetscInt_FMT " max %" PetscInt_FMT, row, a->mbs - 1);
    592:     rp   = aj + ai[row];
    593:     ap   = aa + bs2 * ai[row];
    594:     rmax = imax[row];
    595:     nrow = ailen[row];
    596:     low  = 0;
    597:     high = nrow;
    598:     for (l = 0; l < n; l++) { /* loop over added columns */
    599:       if (in[l] < 0) continue;
    600:       col = in[l];
    601:       PetscCheck(col < a->nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block index column too large %" PetscInt_FMT " max %" PetscInt_FMT, col, a->nbs - 1);
    602:       if (col < row) {
    603:         PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
    604:         continue; /* ignore lower triangular block */
    605:       }
    606:       if (roworiented) value = v + k * (stepval + bs) * bs + l * bs;
    607:       else value = v + l * (stepval + bs) * bs + k * bs;

    609:       if (col <= lastcol) low = 0;
    610:       else high = nrow;

    612:       lastcol = col;
    613:       while (high - low > 7) {
    614:         t = (low + high) / 2;
    615:         if (rp[t] > col) high = t;
    616:         else low = t;
    617:       }
    618:       for (i = low; i < high; i++) {
    619:         if (rp[i] > col) break;
    620:         if (rp[i] == col) {
    621:           bap = ap + bs2 * i;
    622:           if (roworiented) {
    623:             if (is == ADD_VALUES) {
    624:               for (ii = 0; ii < bs; ii++, value += stepval) {
    625:                 for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
    626:               }
    627:             } else {
    628:               for (ii = 0; ii < bs; ii++, value += stepval) {
    629:                 for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
    630:               }
    631:             }
    632:           } else {
    633:             if (is == ADD_VALUES) {
    634:               for (ii = 0; ii < bs; ii++, value += stepval) {
    635:                 for (jj = 0; jj < bs; jj++) *bap++ += *value++;
    636:               }
    637:             } else {
    638:               for (ii = 0; ii < bs; ii++, value += stepval) {
    639:                 for (jj = 0; jj < bs; jj++) *bap++ = *value++;
    640:               }
    641:             }
    642:           }
    643:           goto noinsert2;
    644:         }
    645:       }
    646:       if (nonew == 1) goto noinsert2;
    647:       PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
    648:       MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
    649:       N = nrow++ - 1;
    650:       high++;
    651:       /* shift up all the later entries in this row */
    652:       PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
    653:       PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
    654:       PetscCall(PetscArrayzero(ap + bs2 * i, bs2));
    655:       rp[i] = col;
    656:       bap   = ap + bs2 * i;
    657:       if (roworiented) {
    658:         for (ii = 0; ii < bs; ii++, value += stepval) {
    659:           for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
    660:         }
    661:       } else {
    662:         for (ii = 0; ii < bs; ii++, value += stepval) {
    663:           for (jj = 0; jj < bs; jj++) *bap++ = *value++;
    664:         }
    665:       }
    666:     noinsert2:;
    667:       low = i;
    668:     }
    669:     ailen[row] = nrow;
    670:   }
    671:   PetscFunctionReturn(PETSC_SUCCESS);
    672: }

    674: static PetscErrorCode MatAssemblyEnd_SeqSBAIJ(Mat A, MatAssemblyType mode)
    675: {
    676:   Mat_SeqSBAIJ *a      = (Mat_SeqSBAIJ *)A->data;
    677:   PetscInt      fshift = 0, i, *ai = a->i, *aj = a->j, *imax = a->imax;
    678:   PetscInt      m = A->rmap->N, *ip, N, *ailen = a->ilen;
    679:   PetscInt      mbs = a->mbs, bs2 = a->bs2, rmax = 0;
    680:   MatScalar    *aa = a->a, *ap;

    682:   PetscFunctionBegin;
    683:   if (mode == MAT_FLUSH_ASSEMBLY || (A->was_assembled && A->ass_nonzerostate == A->nonzerostate)) PetscFunctionReturn(PETSC_SUCCESS);

    685:   if (m) rmax = ailen[0];
    686:   for (i = 1; i < mbs; i++) {
    687:     /* move each row back by the amount of empty slots (fshift) before it*/
    688:     fshift += imax[i - 1] - ailen[i - 1];
    689:     rmax = PetscMax(rmax, ailen[i]);
    690:     if (fshift) {
    691:       ip = aj + ai[i];
    692:       ap = aa + bs2 * ai[i];
    693:       N  = ailen[i];
    694:       PetscCall(PetscArraymove(ip - fshift, ip, N));
    695:       PetscCall(PetscArraymove(ap - bs2 * fshift, ap, bs2 * N));
    696:     }
    697:     ai[i] = ai[i - 1] + ailen[i - 1];
    698:   }
    699:   if (mbs) {
    700:     fshift += imax[mbs - 1] - ailen[mbs - 1];
    701:     ai[mbs] = ai[mbs - 1] + ailen[mbs - 1];
    702:   }
    703:   /* reset ilen and imax for each row */
    704:   for (i = 0; i < mbs; i++) ailen[i] = imax[i] = ai[i + 1] - ai[i];
    705:   a->nz = ai[mbs];

    707:   PetscCheck(!fshift || a->nounused != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unused space detected in matrix: %" PetscInt_FMT " X %" PetscInt_FMT " block size %" PetscInt_FMT ", %" PetscInt_FMT " unneeded", m, A->cmap->n, A->rmap->bs, fshift * bs2);

    709:   PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT ", block size %" PetscInt_FMT "; storage space: %" PetscInt_FMT " unneeded, %" PetscInt_FMT " used\n", m, A->rmap->N, A->rmap->bs, fshift * bs2, a->nz * bs2));
    710:   PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues is %" PetscInt_FMT "\n", a->reallocs));
    711:   PetscCall(PetscInfo(A, "Most nonzeros blocks in any row is %" PetscInt_FMT "\n", rmax));

    713:   A->info.mallocs += a->reallocs;
    714:   a->reallocs         = 0;
    715:   A->info.nz_unneeded = (PetscReal)fshift * bs2;
    716:   a->idiagvalid       = PETSC_FALSE;
    717:   a->rmax             = rmax;

    719:   if (A->cmap->n < 65536 && A->cmap->bs == 1) {
    720:     if (a->jshort && a->free_jshort) {
    721:       /* when matrix data structure is changed, previous jshort must be replaced */
    722:       PetscCall(PetscFree(a->jshort));
    723:     }
    724:     PetscCall(PetscMalloc1(a->i[A->rmap->n], &a->jshort));
    725:     for (i = 0; i < a->i[A->rmap->n]; i++) a->jshort[i] = (short)a->j[i];
    726:     A->ops->mult   = MatMult_SeqSBAIJ_1_ushort;
    727:     A->ops->sor    = MatSOR_SeqSBAIJ_ushort;
    728:     a->free_jshort = PETSC_TRUE;
    729:   }
    730:   PetscFunctionReturn(PETSC_SUCCESS);
    731: }

    733: /* Only add/insert a(i,j) with i<=j (blocks).
    734:    Any a(i,j) with i>j input by user is ignored.
    735: */

    737: PetscErrorCode MatSetValues_SeqSBAIJ(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
    738: {
    739:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
    740:   PetscInt     *rp, k, low, high, t, ii, row, nrow, i, col, l, rmax, N, lastcol = -1;
    741:   PetscInt     *imax = a->imax, *ai = a->i, *ailen = a->ilen, roworiented = a->roworiented;
    742:   PetscInt     *aj = a->j, nonew = a->nonew, bs = A->rmap->bs, brow, bcol;
    743:   PetscInt      ridx, cidx, bs2                 = a->bs2;
    744:   MatScalar    *ap, value, *aa                  = a->a, *bap;

    746:   PetscFunctionBegin;
    747:   for (k = 0; k < m; k++) { /* loop over added rows */
    748:     row  = im[k];           /* row number */
    749:     brow = row / bs;        /* block row number */
    750:     if (row < 0) continue;
    751:     PetscCheck(row < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->N - 1);
    752:     rp   = aj + ai[brow];       /*ptr to beginning of column value of the row block*/
    753:     ap   = aa + bs2 * ai[brow]; /*ptr to beginning of element value of the row block*/
    754:     rmax = imax[brow];          /* maximum space allocated for this row */
    755:     nrow = ailen[brow];         /* actual length of this row */
    756:     low  = 0;
    757:     high = nrow;
    758:     for (l = 0; l < n; l++) { /* loop over added columns */
    759:       if (in[l] < 0) continue;
    760:       PetscCheck(in[l] < A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[l], A->cmap->N - 1);
    761:       col  = in[l];
    762:       bcol = col / bs; /* block col number */

    764:       if (brow > bcol) {
    765:         PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
    766:         continue; /* ignore lower triangular values */
    767:       }

    769:       ridx = row % bs;
    770:       cidx = col % bs; /*row and col index inside the block */
    771:       if ((brow == bcol && ridx <= cidx) || (brow < bcol)) {
    772:         /* element value a(k,l) */
    773:         if (roworiented) value = v[l + k * n];
    774:         else value = v[k + l * m];

    776:         /* move pointer bap to a(k,l) quickly and add/insert value */
    777:         if (col <= lastcol) low = 0;
    778:         else high = nrow;

    780:         lastcol = col;
    781:         while (high - low > 7) {
    782:           t = (low + high) / 2;
    783:           if (rp[t] > bcol) high = t;
    784:           else low = t;
    785:         }
    786:         for (i = low; i < high; i++) {
    787:           if (rp[i] > bcol) break;
    788:           if (rp[i] == bcol) {
    789:             bap = ap + bs2 * i + bs * cidx + ridx;
    790:             if (is == ADD_VALUES) *bap += value;
    791:             else *bap = value;
    792:             /* for diag block, add/insert its symmetric element a(cidx,ridx) */
    793:             if (brow == bcol && ridx < cidx) {
    794:               bap = ap + bs2 * i + bs * ridx + cidx;
    795:               if (is == ADD_VALUES) *bap += value;
    796:               else *bap = value;
    797:             }
    798:             goto noinsert1;
    799:           }
    800:         }

    802:         if (nonew == 1) goto noinsert1;
    803:         PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
    804:         MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);

    806:         N = nrow++ - 1;
    807:         high++;
    808:         /* shift up all the later entries in this row */
    809:         PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
    810:         PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
    811:         PetscCall(PetscArrayzero(ap + bs2 * i, bs2));
    812:         rp[i]                          = bcol;
    813:         ap[bs2 * i + bs * cidx + ridx] = value;
    814:         /* for diag block, add/insert its symmetric element a(cidx,ridx) */
    815:         if (brow == bcol && ridx < cidx) ap[bs2 * i + bs * ridx + cidx] = value;
    816:       noinsert1:;
    817:         low = i;
    818:       }
    819:     } /* end of loop over added columns */
    820:     ailen[brow] = nrow;
    821:   } /* end of loop over added rows */
    822:   PetscFunctionReturn(PETSC_SUCCESS);
    823: }

    825: static PetscErrorCode MatICCFactor_SeqSBAIJ(Mat inA, IS row, const MatFactorInfo *info)
    826: {
    827:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inA->data;
    828:   Mat           outA;
    829:   PetscBool     row_identity;

    831:   PetscFunctionBegin;
    832:   PetscCheck(info->levels == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only levels=0 is supported for in-place icc");
    833:   PetscCall(ISIdentity(row, &row_identity));
    834:   PetscCheck(row_identity, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix reordering is not supported");
    835:   PetscCheck(inA->rmap->bs == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix block size %" PetscInt_FMT " is not supported", inA->rmap->bs); /* Need to replace MatCholeskyFactorSymbolic_SeqSBAIJ_MSR()! */

    837:   outA = inA;
    838:   PetscCall(PetscFree(inA->solvertype));
    839:   PetscCall(PetscStrallocpy(MATSOLVERPETSC, &inA->solvertype));

    841:   inA->factortype = MAT_FACTOR_ICC;
    842:   PetscCall(MatSeqSBAIJSetNumericFactorization_inplace(inA, row_identity));

    844:   PetscCall(PetscObjectReference((PetscObject)row));
    845:   PetscCall(ISDestroy(&a->row));
    846:   a->row = row;
    847:   PetscCall(PetscObjectReference((PetscObject)row));
    848:   PetscCall(ISDestroy(&a->col));
    849:   a->col = row;

    851:   /* Create the invert permutation so that it can be used in MatCholeskyFactorNumeric() */
    852:   if (a->icol) PetscCall(ISInvertPermutation(row, PETSC_DECIDE, &a->icol));

    854:   if (!a->solve_work) PetscCall(PetscMalloc1(inA->rmap->N + inA->rmap->bs, &a->solve_work));

    856:   PetscCall(MatCholeskyFactorNumeric(outA, inA, info));
    857:   PetscFunctionReturn(PETSC_SUCCESS);
    858: }

    860: static PetscErrorCode MatSeqSBAIJSetColumnIndices_SeqSBAIJ(Mat mat, PetscInt *indices)
    861: {
    862:   Mat_SeqSBAIJ *baij = (Mat_SeqSBAIJ *)mat->data;
    863:   PetscInt      i, nz, n;

    865:   PetscFunctionBegin;
    866:   nz = baij->maxnz;
    867:   n  = mat->cmap->n;
    868:   for (i = 0; i < nz; i++) baij->j[i] = indices[i];

    870:   baij->nz = nz;
    871:   for (i = 0; i < n; i++) baij->ilen[i] = baij->imax[i];

    873:   PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
    874:   PetscFunctionReturn(PETSC_SUCCESS);
    875: }

    877: /*@
    878:   MatSeqSBAIJSetColumnIndices - Set the column indices for all the rows
    879:   in a `MATSEQSBAIJ` matrix.

    881:   Input Parameters:
    882: + mat     - the `MATSEQSBAIJ` matrix
    883: - indices - the column indices

    885:   Level: advanced

    887:   Notes:
    888:   This can be called if you have precomputed the nonzero structure of the
    889:   matrix and want to provide it to the matrix object to improve the performance
    890:   of the `MatSetValues()` operation.

    892:   You MUST have set the correct numbers of nonzeros per row in the call to
    893:   `MatCreateSeqSBAIJ()`, and the columns indices MUST be sorted.

    895:   MUST be called before any calls to `MatSetValues()`

    897: .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatCreateSeqSBAIJ`
    898: @*/
    899: PetscErrorCode MatSeqSBAIJSetColumnIndices(Mat mat, PetscInt *indices)
    900: {
    901:   PetscFunctionBegin;
    903:   PetscAssertPointer(indices, 2);
    904:   PetscUseMethod(mat, "MatSeqSBAIJSetColumnIndices_C", (Mat, PetscInt *), (mat, indices));
    905:   PetscFunctionReturn(PETSC_SUCCESS);
    906: }

    908: static PetscErrorCode MatCopy_SeqSBAIJ(Mat A, Mat B, MatStructure str)
    909: {
    910:   PetscBool isbaij;

    912:   PetscFunctionBegin;
    913:   PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
    914:   PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
    915:   /* If the two matrices have the same copy implementation and nonzero pattern, use fast copy. */
    916:   if (str == SAME_NONZERO_PATTERN && A->ops->copy == B->ops->copy) {
    917:     Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
    918:     Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ *)B->data;

    920:     PetscCheck(a->i[a->mbs] == b->i[b->mbs], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different");
    921:     PetscCheck(a->mbs == b->mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of rows in two matrices are different");
    922:     PetscCheck(a->bs2 == b->bs2, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Different block size");
    923:     PetscCall(PetscArraycpy(b->a, a->a, a->bs2 * a->i[a->mbs]));
    924:     PetscCall(PetscObjectStateIncrease((PetscObject)B));
    925:   } else {
    926:     PetscCall(MatGetRowUpperTriangular(A));
    927:     PetscCall(MatCopy_Basic(A, B, str));
    928:     PetscCall(MatRestoreRowUpperTriangular(A));
    929:   }
    930:   PetscFunctionReturn(PETSC_SUCCESS);
    931: }

    933: static PetscErrorCode MatSeqSBAIJGetArray_SeqSBAIJ(Mat A, PetscScalar *array[])
    934: {
    935:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;

    937:   PetscFunctionBegin;
    938:   *array = a->a;
    939:   PetscFunctionReturn(PETSC_SUCCESS);
    940: }

    942: static PetscErrorCode MatSeqSBAIJRestoreArray_SeqSBAIJ(Mat A, PetscScalar *array[])
    943: {
    944:   PetscFunctionBegin;
    945:   *array = NULL;
    946:   PetscFunctionReturn(PETSC_SUCCESS);
    947: }

    949: PetscErrorCode MatAXPYGetPreallocation_SeqSBAIJ(Mat Y, Mat X, PetscInt *nnz)
    950: {
    951:   PetscInt      bs = Y->rmap->bs, mbs = Y->rmap->N / bs;
    952:   Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ *)X->data;
    953:   Mat_SeqSBAIJ *y = (Mat_SeqSBAIJ *)Y->data;

    955:   PetscFunctionBegin;
    956:   /* Set the number of nonzeros in the new matrix */
    957:   PetscCall(MatAXPYGetPreallocation_SeqX_private(mbs, x->i, x->j, y->i, y->j, nnz));
    958:   PetscFunctionReturn(PETSC_SUCCESS);
    959: }

    961: static PetscErrorCode MatAXPY_SeqSBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
    962: {
    963:   Mat_SeqSBAIJ *x = (Mat_SeqSBAIJ *)X->data, *y = (Mat_SeqSBAIJ *)Y->data;
    964:   PetscInt      bs = Y->rmap->bs, bs2 = bs * bs;
    965:   PetscBLASInt  one = 1;

    967:   PetscFunctionBegin;
    968:   if (str == UNKNOWN_NONZERO_PATTERN || (PetscDefined(USE_DEBUG) && str == SAME_NONZERO_PATTERN)) {
    969:     PetscBool e = x->nz == y->nz && x->mbs == y->mbs ? PETSC_TRUE : PETSC_FALSE;
    970:     if (e) {
    971:       PetscCall(PetscArraycmp(x->i, y->i, x->mbs + 1, &e));
    972:       if (e) {
    973:         PetscCall(PetscArraycmp(x->j, y->j, x->i[x->mbs], &e));
    974:         if (e) str = SAME_NONZERO_PATTERN;
    975:       }
    976:     }
    977:     if (!e) PetscCheck(str != SAME_NONZERO_PATTERN, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MatStructure is not SAME_NONZERO_PATTERN");
    978:   }
    979:   if (str == SAME_NONZERO_PATTERN) {
    980:     PetscScalar  alpha = a;
    981:     PetscBLASInt bnz;
    982:     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
    983:     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
    984:     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
    985:   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
    986:     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
    987:     PetscCall(MatAXPY_Basic(Y, a, X, str));
    988:     PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
    989:   } else {
    990:     Mat       B;
    991:     PetscInt *nnz;
    992:     PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
    993:     PetscCall(MatGetRowUpperTriangular(X));
    994:     PetscCall(MatGetRowUpperTriangular(Y));
    995:     PetscCall(PetscMalloc1(Y->rmap->N, &nnz));
    996:     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
    997:     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
    998:     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
    999:     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
    1000:     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
    1001:     PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(Y, X, nnz));
    1002:     PetscCall(MatSeqSBAIJSetPreallocation(B, bs, 0, nnz));

    1004:     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));

    1006:     PetscCall(MatHeaderMerge(Y, &B));
    1007:     PetscCall(PetscFree(nnz));
    1008:     PetscCall(MatRestoreRowUpperTriangular(X));
    1009:     PetscCall(MatRestoreRowUpperTriangular(Y));
    1010:   }
    1011:   PetscFunctionReturn(PETSC_SUCCESS);
    1012: }

    1014: static PetscErrorCode MatIsStructurallySymmetric_SeqSBAIJ(Mat A, PetscBool *flg)
    1015: {
    1016:   PetscFunctionBegin;
    1017:   *flg = PETSC_TRUE;
    1018:   PetscFunctionReturn(PETSC_SUCCESS);
    1019: }

    1021: static PetscErrorCode MatConjugate_SeqSBAIJ(Mat A)
    1022: {
    1023:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
    1024:   PetscInt      i, nz = a->bs2 * a->i[a->mbs];
    1025:   MatScalar    *aa = a->a;

    1027:   PetscFunctionBegin;
    1028:   for (i = 0; i < nz; i++) aa[i] = PetscConj(aa[i]);
    1029:   PetscFunctionReturn(PETSC_SUCCESS);
    1030: }

    1032: static PetscErrorCode MatRealPart_SeqSBAIJ(Mat A)
    1033: {
    1034:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
    1035:   PetscInt      i, nz = a->bs2 * a->i[a->mbs];
    1036:   MatScalar    *aa = a->a;

    1038:   PetscFunctionBegin;
    1039:   for (i = 0; i < nz; i++) aa[i] = PetscRealPart(aa[i]);
    1040:   PetscFunctionReturn(PETSC_SUCCESS);
    1041: }

    1043: static PetscErrorCode MatImaginaryPart_SeqSBAIJ(Mat A)
    1044: {
    1045:   Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
    1046:   PetscInt      i, nz = a->bs2 * a->i[a->mbs];
    1047:   MatScalar    *aa = a->a;

    1049:   PetscFunctionBegin;
    1050:   for (i = 0; i < nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
    1051:   PetscFunctionReturn(PETSC_SUCCESS);
    1052: }

    1054: static PetscErrorCode MatZeroRowsColumns_SeqSBAIJ(Mat A, PetscInt is_n, const PetscInt is_idx[], PetscScalar diag, Vec x, Vec b)
    1055: {
    1056:   Mat_SeqSBAIJ      *baij = (Mat_SeqSBAIJ *)A->data;
    1057:   PetscInt           i, j, k, count;
    1058:   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2, row, col;
    1059:   PetscScalar        zero = 0.0;
    1060:   MatScalar         *aa;
    1061:   const PetscScalar *xx;
    1062:   PetscScalar       *bb;
    1063:   PetscBool         *zeroed, vecs = PETSC_FALSE;

    1065:   PetscFunctionBegin;
    1066:   /* fix right-hand side if needed */
    1067:   if (x && b) {
    1068:     PetscCall(VecGetArrayRead(x, &xx));
    1069:     PetscCall(VecGetArray(b, &bb));
    1070:     vecs = PETSC_TRUE;
    1071:   }

    1073:   /* zero the columns */
    1074:   PetscCall(PetscCalloc1(A->rmap->n, &zeroed));
    1075:   for (i = 0; i < is_n; i++) {
    1076:     PetscCheck(is_idx[i] >= 0 && is_idx[i] < A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "row %" PetscInt_FMT " out of range", is_idx[i]);
    1077:     zeroed[is_idx[i]] = PETSC_TRUE;
    1078:   }
    1079:   if (vecs) {
    1080:     for (i = 0; i < A->rmap->N; i++) {
    1081:       row = i / bs;
    1082:       for (j = baij->i[row]; j < baij->i[row + 1]; j++) {
    1083:         for (k = 0; k < bs; k++) {
    1084:           col = bs * baij->j[j] + k;
    1085:           if (col <= i) continue;
    1086:           aa = baij->a + j * bs2 + (i % bs) + bs * k;
    1087:           if (!zeroed[i] && zeroed[col]) bb[i] -= aa[0] * xx[col];
    1088:           if (zeroed[i] && !zeroed[col]) bb[col] -= aa[0] * xx[i];
    1089:         }
    1090:       }
    1091:     }
    1092:     for (i = 0; i < is_n; i++) bb[is_idx[i]] = diag * xx[is_idx[i]];
    1093:   }

    1095:   for (i = 0; i < A->rmap->N; i++) {
    1096:     if (!zeroed[i]) {
    1097:       row = i / bs;
    1098:       for (j = baij->i[row]; j < baij->i[row + 1]; j++) {
    1099:         for (k = 0; k < bs; k++) {
    1100:           col = bs * baij->j[j] + k;
    1101:           if (zeroed[col]) {
    1102:             aa    = baij->a + j * bs2 + (i % bs) + bs * k;
    1103:             aa[0] = 0.0;
    1104:           }
    1105:         }
    1106:       }
    1107:     }
    1108:   }
    1109:   PetscCall(PetscFree(zeroed));
    1110:   if (vecs) {
    1111:     PetscCall(VecRestoreArrayRead(x, &xx));
    1112:     PetscCall(VecRestoreArray(b, &bb));
    1113:   }

    1115:   /* zero the rows */
    1116:   for (i = 0; i < is_n; i++) {
    1117:     row   = is_idx[i];
    1118:     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
    1119:     aa    = baij->a + baij->i[row / bs] * bs2 + (row % bs);
    1120:     for (k = 0; k < count; k++) {
    1121:       aa[0] = zero;
    1122:       aa += bs;
    1123:     }
    1124:     if (diag != 0.0) PetscUseTypeMethod(A, setvalues, 1, &row, 1, &row, &diag, INSERT_VALUES);
    1125:   }
    1126:   PetscCall(MatAssemblyEnd_SeqSBAIJ(A, MAT_FINAL_ASSEMBLY));
    1127:   PetscFunctionReturn(PETSC_SUCCESS);
    1128: }

    1130: static PetscErrorCode MatShift_SeqSBAIJ(Mat Y, PetscScalar a)
    1131: {
    1132:   Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)Y->data;

    1134:   PetscFunctionBegin;
    1135:   if (!Y->preallocated || !aij->nz) PetscCall(MatSeqSBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL));
    1136:   PetscCall(MatShift_Basic(Y, a));
    1137:   PetscFunctionReturn(PETSC_SUCCESS);
    1138: }

    1140: PetscErrorCode MatEliminateZeros_SeqSBAIJ(Mat A, PetscBool keep)
    1141: {
    1142:   Mat_SeqSBAIJ *a      = (Mat_SeqSBAIJ *)A->data;
    1143:   PetscInt      fshift = 0, fshift_prev = 0, i, *ai = a->i, *aj = a->j, *imax = a->imax, j, k;
    1144:   PetscInt      m = A->rmap->N, *ailen = a->ilen;
    1145:   PetscInt      mbs = a->mbs, bs2 = a->bs2, rmax = 0;
    1146:   MatScalar    *aa = a->a, *ap;
    1147:   PetscBool     zero;

    1149:   PetscFunctionBegin;
    1150:   PetscCheck(A->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot eliminate zeros for unassembled matrix");
    1151:   if (m) rmax = ailen[0];
    1152:   for (i = 1, a->nonzerorowcnt = 0; i <= mbs; i++) {
    1153:     for (k = ai[i - 1]; k < ai[i]; k++) {
    1154:       zero = PETSC_TRUE;
    1155:       ap   = aa + bs2 * k;
    1156:       for (j = 0; j < bs2 && zero; j++) {
    1157:         if (ap[j] != 0.0) zero = PETSC_FALSE;
    1158:       }
    1159:       if (zero && (aj[k] != i - 1 || !keep)) fshift++;
    1160:       else {
    1161:         if (zero && aj[k] == i - 1) PetscCall(PetscInfo(A, "Keep the diagonal block at row %" PetscInt_FMT "\n", i - 1));
    1162:         aj[k - fshift] = aj[k];
    1163:         PetscCall(PetscArraymove(ap - bs2 * fshift, ap, bs2));
    1164:       }
    1165:     }
    1166:     ai[i - 1] -= fshift_prev;
    1167:     fshift_prev  = fshift;
    1168:     ailen[i - 1] = imax[i - 1] = ai[i] - fshift - ai[i - 1];
    1169:     a->nonzerorowcnt += ((ai[i] - fshift - ai[i - 1]) > 0);
    1170:     rmax = PetscMax(rmax, ailen[i - 1]);
    1171:   }
    1172:   if (fshift) {
    1173:     if (mbs) {
    1174:       ai[mbs] -= fshift;
    1175:       a->nz = ai[mbs];
    1176:     }
    1177:     PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; zeros eliminated: %" PetscInt_FMT "; nonzeros left: %" PetscInt_FMT "\n", m, A->cmap->n, fshift, a->nz));
    1178:     A->nonzerostate++;
    1179:     A->info.nz_unneeded += (PetscReal)fshift;
    1180:     a->rmax = rmax;
    1181:     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
    1182:     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
    1183:   }
    1184:   PetscFunctionReturn(PETSC_SUCCESS);
    1185: }

    1187: static struct _MatOps MatOps_Values = {MatSetValues_SeqSBAIJ,
    1188:                                        MatGetRow_SeqSBAIJ,
    1189:                                        MatRestoreRow_SeqSBAIJ,
    1190:                                        MatMult_SeqSBAIJ_N,
    1191:                                        /*  4*/ MatMultAdd_SeqSBAIJ_N,
    1192:                                        MatMult_SeqSBAIJ_N, /* transpose versions are same as non-transpose versions */
    1193:                                        MatMultAdd_SeqSBAIJ_N,
    1194:                                        NULL,
    1195:                                        NULL,
    1196:                                        NULL,
    1197:                                        /* 10*/ NULL,
    1198:                                        NULL,
    1199:                                        MatCholeskyFactor_SeqSBAIJ,
    1200:                                        MatSOR_SeqSBAIJ,
    1201:                                        MatTranspose_SeqSBAIJ,
    1202:                                        /* 15*/ MatGetInfo_SeqSBAIJ,
    1203:                                        MatEqual_SeqSBAIJ,
    1204:                                        MatGetDiagonal_SeqSBAIJ,
    1205:                                        MatDiagonalScale_SeqSBAIJ,
    1206:                                        MatNorm_SeqSBAIJ,
    1207:                                        /* 20*/ NULL,
    1208:                                        MatAssemblyEnd_SeqSBAIJ,
    1209:                                        MatSetOption_SeqSBAIJ,
    1210:                                        MatZeroEntries_SeqSBAIJ,
    1211:                                        /* 24*/ NULL,
    1212:                                        NULL,
    1213:                                        NULL,
    1214:                                        NULL,
    1215:                                        NULL,
    1216:                                        /* 29*/ MatSetUp_Seq_Hash,
    1217:                                        NULL,
    1218:                                        NULL,
    1219:                                        NULL,
    1220:                                        NULL,
    1221:                                        /* 34*/ MatDuplicate_SeqSBAIJ,
    1222:                                        NULL,
    1223:                                        NULL,
    1224:                                        NULL,
    1225:                                        MatICCFactor_SeqSBAIJ,
    1226:                                        /* 39*/ MatAXPY_SeqSBAIJ,
    1227:                                        MatCreateSubMatrices_SeqSBAIJ,
    1228:                                        MatIncreaseOverlap_SeqSBAIJ,
    1229:                                        MatGetValues_SeqSBAIJ,
    1230:                                        MatCopy_SeqSBAIJ,
    1231:                                        /* 44*/ NULL,
    1232:                                        MatScale_SeqSBAIJ,
    1233:                                        MatShift_SeqSBAIJ,
    1234:                                        NULL,
    1235:                                        MatZeroRowsColumns_SeqSBAIJ,
    1236:                                        /* 49*/ NULL,
    1237:                                        MatGetRowIJ_SeqSBAIJ,
    1238:                                        MatRestoreRowIJ_SeqSBAIJ,
    1239:                                        NULL,
    1240:                                        NULL,
    1241:                                        /* 54*/ NULL,
    1242:                                        NULL,
    1243:                                        NULL,
    1244:                                        MatPermute_SeqSBAIJ,
    1245:                                        MatSetValuesBlocked_SeqSBAIJ,
    1246:                                        /* 59*/ MatCreateSubMatrix_SeqSBAIJ,
    1247:                                        NULL,
    1248:                                        NULL,
    1249:                                        NULL,
    1250:                                        NULL,
    1251:                                        /* 64*/ NULL,
    1252:                                        NULL,
    1253:                                        NULL,
    1254:                                        NULL,
    1255:                                        MatGetRowMaxAbs_SeqSBAIJ,
    1256:                                        /* 69*/ NULL,
    1257:                                        MatConvert_MPISBAIJ_Basic,
    1258:                                        NULL,
    1259:                                        NULL,
    1260:                                        NULL,
    1261:                                        /* 74*/ NULL,
    1262:                                        NULL,
    1263:                                        NULL,
    1264:                                        MatGetInertia_SeqSBAIJ,
    1265:                                        MatLoad_SeqSBAIJ,
    1266:                                        /* 79*/ NULL,
    1267:                                        NULL,
    1268:                                        MatIsStructurallySymmetric_SeqSBAIJ,
    1269:                                        NULL,
    1270:                                        NULL,
    1271:                                        /* 84*/ NULL,
    1272:                                        NULL,
    1273:                                        NULL,
    1274:                                        NULL,
    1275:                                        NULL,
    1276:                                        /* 89*/ NULL,
    1277:                                        NULL,
    1278:                                        NULL,
    1279:                                        NULL,
    1280:                                        MatConjugate_SeqSBAIJ,
    1281:                                        /* 94*/ NULL,
    1282:                                        NULL,
    1283:                                        MatRealPart_SeqSBAIJ,
    1284:                                        MatImaginaryPart_SeqSBAIJ,
    1285:                                        MatGetRowUpperTriangular_SeqSBAIJ,
    1286:                                        /* 99*/ MatRestoreRowUpperTriangular_SeqSBAIJ,
    1287:                                        NULL,
    1288:                                        NULL,
    1289:                                        NULL,
    1290:                                        NULL,
    1291:                                        /*104*/ NULL,
    1292:                                        NULL,
    1293:                                        NULL,
    1294:                                        NULL,
    1295:                                        NULL,
    1296:                                        /*109*/ NULL,
    1297:                                        NULL,
    1298:                                        NULL,
    1299:                                        NULL,
    1300:                                        NULL,
    1301:                                        /*114*/ NULL,
    1302:                                        NULL,
    1303:                                        NULL,
    1304:                                        NULL,
    1305:                                        NULL,
    1306:                                        /*119*/ NULL,
    1307:                                        NULL,
    1308:                                        NULL,
    1309:                                        NULL,
    1310:                                        NULL,
    1311:                                        /*124*/ NULL,
    1312:                                        NULL,
    1313:                                        MatSetBlockSizes_Default,
    1314:                                        NULL,
    1315:                                        NULL,
    1316:                                        /*129*/ NULL,
    1317:                                        MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ,
    1318:                                        NULL,
    1319:                                        NULL,
    1320:                                        NULL,
    1321:                                        /*134*/ NULL,
    1322:                                        NULL,
    1323:                                        MatEliminateZeros_SeqSBAIJ,
    1324:                                        NULL,
    1325:                                        NULL,
    1326:                                        /*139*/ NULL,
    1327:                                        NULL,
    1328:                                        MatCopyHashToXAIJ_Seq_Hash,
    1329:                                        NULL,
    1330:                                        NULL,
    1331:                                        /*144*/ MatADot_Default,
    1332:                                        MatANorm_Default,
    1333:                                        NULL,
    1334:                                        NULL};

    1336: static PetscErrorCode MatStoreValues_SeqSBAIJ(Mat mat)
    1337: {
    1338:   Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data;
    1339:   PetscInt      nz  = aij->i[mat->rmap->N] * mat->rmap->bs * aij->bs2;

    1341:   PetscFunctionBegin;
    1342:   PetscCheck(aij->nonew == 1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");

    1344:   /* allocate space for values if not already there */
    1345:   if (!aij->saved_values) PetscCall(PetscMalloc1(nz + 1, &aij->saved_values));

    1347:   /* copy values over */
    1348:   PetscCall(PetscArraycpy(aij->saved_values, aij->a, nz));
    1349:   PetscFunctionReturn(PETSC_SUCCESS);
    1350: }

    1352: static PetscErrorCode MatRetrieveValues_SeqSBAIJ(Mat mat)
    1353: {
    1354:   Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)mat->data;
    1355:   PetscInt      nz  = aij->i[mat->rmap->N] * mat->rmap->bs * aij->bs2;

    1357:   PetscFunctionBegin;
    1358:   PetscCheck(aij->nonew == 1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
    1359:   PetscCheck(aij->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first");

    1361:   /* copy values over */
    1362:   PetscCall(PetscArraycpy(aij->a, aij->saved_values, nz));
    1363:   PetscFunctionReturn(PETSC_SUCCESS);
    1364: }

    1366: static PetscErrorCode MatSeqSBAIJSetPreallocation_SeqSBAIJ(Mat B, PetscInt bs, PetscInt nz, const PetscInt nnz[])
    1367: {
    1368:   Mat_SeqSBAIJ *b = (Mat_SeqSBAIJ *)B->data;
    1369:   PetscInt      i, mbs, nbs, bs2;
    1370:   PetscBool     skipallocation = PETSC_FALSE, flg = PETSC_FALSE, realalloc = PETSC_FALSE;

    1372:   PetscFunctionBegin;
    1373:   if (B->hash_active) {
    1374:     PetscInt bs;
    1375:     B->ops[0] = b->cops;
    1376:     PetscCall(PetscHMapIJVDestroy(&b->ht));
    1377:     PetscCall(MatGetBlockSize(B, &bs));
    1378:     if (bs > 1) PetscCall(PetscHSetIJDestroy(&b->bht));
    1379:     PetscCall(PetscFree(b->dnz));
    1380:     PetscCall(PetscFree(b->bdnz));
    1381:     B->hash_active = PETSC_FALSE;
    1382:   }
    1383:   if (nz >= 0 || nnz) realalloc = PETSC_TRUE;

    1385:   PetscCall(MatSetBlockSize(B, bs));
    1386:   PetscCall(PetscLayoutSetUp(B->rmap));
    1387:   PetscCall(PetscLayoutSetUp(B->cmap));
    1388:   PetscCheck(B->rmap->N <= B->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "SEQSBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
    1389:   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));

    1391:   B->preallocated = PETSC_TRUE;

    1393:   mbs = B->rmap->N / bs;
    1394:   nbs = B->cmap->n / bs;
    1395:   bs2 = bs * bs;

    1397:   PetscCheck(mbs * bs == B->rmap->N && nbs * bs == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number rows, cols must be divisible by blocksize");

    1399:   if (nz == MAT_SKIP_ALLOCATION) {
    1400:     skipallocation = PETSC_TRUE;
    1401:     nz             = 0;
    1402:   }

    1404:   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 3;
    1405:   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nz cannot be less than 0: value %" PetscInt_FMT, nz);
    1406:   if (nnz) {
    1407:     for (i = 0; i < mbs; i++) {
    1408:       PetscCheck(nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, nnz[i]);
    1409:       PetscCheck(nnz[i] <= nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nnz cannot be greater than block row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " block rowlength %" PetscInt_FMT, i, nnz[i], nbs);
    1410:     }
    1411:   }

    1413:   B->ops->mult             = MatMult_SeqSBAIJ_N;
    1414:   B->ops->multadd          = MatMultAdd_SeqSBAIJ_N;
    1415:   B->ops->multtranspose    = MatMult_SeqSBAIJ_N;
    1416:   B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_N;

    1418:   PetscCall(PetscOptionsGetBool(((PetscObject)B)->options, ((PetscObject)B)->prefix, "-mat_no_unroll", &flg, NULL));
    1419:   if (!flg) {
    1420:     switch (bs) {
    1421:     case 1:
    1422:       B->ops->mult             = MatMult_SeqSBAIJ_1;
    1423:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_1;
    1424:       B->ops->multtranspose    = MatMult_SeqSBAIJ_1;
    1425:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_1;
    1426:       break;
    1427:     case 2:
    1428:       B->ops->mult             = MatMult_SeqSBAIJ_2;
    1429:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_2;
    1430:       B->ops->multtranspose    = MatMult_SeqSBAIJ_2;
    1431:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_2;
    1432:       break;
    1433:     case 3:
    1434:       B->ops->mult             = MatMult_SeqSBAIJ_3;
    1435:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_3;
    1436:       B->ops->multtranspose    = MatMult_SeqSBAIJ_3;
    1437:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_3;
    1438:       break;
    1439:     case 4:
    1440:       B->ops->mult             = MatMult_SeqSBAIJ_4;
    1441:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_4;
    1442:       B->ops->multtranspose    = MatMult_SeqSBAIJ_4;
    1443:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_4;
    1444:       break;
    1445:     case 5:
    1446:       B->ops->mult             = MatMult_SeqSBAIJ_5;
    1447:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_5;
    1448:       B->ops->multtranspose    = MatMult_SeqSBAIJ_5;
    1449:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_5;
    1450:       break;
    1451:     case 6:
    1452:       B->ops->mult             = MatMult_SeqSBAIJ_6;
    1453:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_6;
    1454:       B->ops->multtranspose    = MatMult_SeqSBAIJ_6;
    1455:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_6;
    1456:       break;
    1457:     case 7:
    1458:       B->ops->mult             = MatMult_SeqSBAIJ_7;
    1459:       B->ops->multadd          = MatMultAdd_SeqSBAIJ_7;
    1460:       B->ops->multtranspose    = MatMult_SeqSBAIJ_7;
    1461:       B->ops->multtransposeadd = MatMultAdd_SeqSBAIJ_7;
    1462:       break;
    1463:     }
    1464:   }

    1466:   b->mbs = mbs;
    1467:   b->nbs = nbs;
    1468:   if (!skipallocation) {
    1469:     if (!b->imax) {
    1470:       PetscCall(PetscMalloc2(mbs, &b->imax, mbs, &b->ilen));

    1472:       b->free_imax_ilen = PETSC_TRUE;
    1473:     }
    1474:     if (!nnz) {
    1475:       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
    1476:       else if (nz <= 0) nz = 1;
    1477:       nz = PetscMin(nbs, nz);
    1478:       for (i = 0; i < mbs; i++) b->imax[i] = nz;
    1479:       PetscCall(PetscIntMultError(nz, mbs, &nz));
    1480:     } else {
    1481:       PetscInt64 nz64 = 0;
    1482:       for (i = 0; i < mbs; i++) {
    1483:         b->imax[i] = nnz[i];
    1484:         nz64 += nnz[i];
    1485:       }
    1486:       PetscCall(PetscIntCast(nz64, &nz));
    1487:     }
    1488:     /* b->ilen will count nonzeros in each block row so far. */
    1489:     for (i = 0; i < mbs; i++) b->ilen[i] = 0;
    1490:     /* nz=(nz+mbs)/2; */ /* total diagonal and superdiagonal nonzero blocks */

    1492:     /* allocate the matrix space */
    1493:     PetscCall(MatSeqXAIJFreeAIJ(B, &b->a, &b->j, &b->i));
    1494:     PetscCall(PetscShmgetAllocateArray(bs2 * nz, sizeof(PetscScalar), (void **)&b->a));
    1495:     PetscCall(PetscShmgetAllocateArray(nz, sizeof(PetscInt), (void **)&b->j));
    1496:     PetscCall(PetscShmgetAllocateArray(B->rmap->n + 1, sizeof(PetscInt), (void **)&b->i));
    1497:     b->free_a  = PETSC_TRUE;
    1498:     b->free_ij = PETSC_TRUE;
    1499:     PetscCall(PetscArrayzero(b->a, nz * bs2));
    1500:     PetscCall(PetscArrayzero(b->j, nz));
    1501:     b->free_a  = PETSC_TRUE;
    1502:     b->free_ij = PETSC_TRUE;

    1504:     /* pointer to beginning of each row */
    1505:     b->i[0] = 0;
    1506:     for (i = 1; i < mbs + 1; i++) b->i[i] = b->i[i - 1] + b->imax[i - 1];

    1508:   } else {
    1509:     b->free_a  = PETSC_FALSE;
    1510:     b->free_ij = PETSC_FALSE;
    1511:   }

    1513:   b->bs2     = bs2;
    1514:   b->nz      = 0;
    1515:   b->maxnz   = nz;
    1516:   b->inew    = NULL;
    1517:   b->jnew    = NULL;
    1518:   b->anew    = NULL;
    1519:   b->a2anew  = NULL;
    1520:   b->permute = PETSC_FALSE;

    1522:   B->was_assembled = PETSC_FALSE;
    1523:   B->assembled     = PETSC_FALSE;
    1524:   if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
    1525:   PetscFunctionReturn(PETSC_SUCCESS);
    1526: }

    1528: static PetscErrorCode MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
    1529: {
    1530:   PetscInt      i, j, m, nz, anz, nz_max = 0, *nnz;
    1531:   PetscScalar  *values      = NULL;
    1532:   Mat_SeqSBAIJ *b           = (Mat_SeqSBAIJ *)B->data;
    1533:   PetscBool     roworiented = b->roworiented;
    1534:   PetscBool     ilw         = b->ignore_ltriangular;

    1536:   PetscFunctionBegin;
    1537:   PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
    1538:   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
    1539:   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
    1540:   PetscCall(PetscLayoutSetUp(B->rmap));
    1541:   PetscCall(PetscLayoutSetUp(B->cmap));
    1542:   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
    1543:   m = B->rmap->n / bs;

    1545:   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
    1546:   PetscCall(PetscMalloc1(m + 1, &nnz));
    1547:   for (i = 0; i < m; i++) {
    1548:     nz = ii[i + 1] - ii[i];
    1549:     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
    1550:     PetscCheckSorted(nz, jj + ii[i]);
    1551:     anz = 0;
    1552:     for (j = 0; j < nz; j++) {
    1553:       /* count only values on the diagonal or above */
    1554:       if (jj[ii[i] + j] >= i) {
    1555:         anz = nz - j;
    1556:         break;
    1557:       }
    1558:     }
    1559:     nz_max = PetscMax(nz_max, nz);
    1560:     nnz[i] = anz;
    1561:   }
    1562:   PetscCall(MatSeqSBAIJSetPreallocation(B, bs, 0, nnz));
    1563:   PetscCall(PetscFree(nnz));

    1565:   values = (PetscScalar *)V;
    1566:   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
    1567:   b->ignore_ltriangular = PETSC_TRUE;
    1568:   for (i = 0; i < m; i++) {
    1569:     PetscInt        ncols = ii[i + 1] - ii[i];
    1570:     const PetscInt *icols = jj + ii[i];

    1572:     if (!roworiented || bs == 1) {
    1573:       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
    1574:       PetscCall(MatSetValuesBlocked_SeqSBAIJ(B, 1, &i, ncols, icols, svals, INSERT_VALUES));
    1575:     } else {
    1576:       for (j = 0; j < ncols; j++) {
    1577:         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
    1578:         PetscCall(MatSetValuesBlocked_SeqSBAIJ(B, 1, &i, 1, &icols[j], svals, INSERT_VALUES));
    1579:       }
    1580:     }
    1581:   }
    1582:   if (!V) PetscCall(PetscFree(values));
    1583:   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
    1584:   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
    1585:   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
    1586:   b->ignore_ltriangular = ilw;
    1587:   PetscFunctionReturn(PETSC_SUCCESS);
    1588: }

    1590: /*
    1591:    This is used to set the numeric factorization for both Cholesky and ICC symbolic factorization
    1592: */
    1593: PetscErrorCode MatSeqSBAIJSetNumericFactorization_inplace(Mat B, PetscBool natural)
    1594: {
    1595:   PetscBool flg = PETSC_FALSE;
    1596:   PetscInt  bs  = B->rmap->bs;

    1598:   PetscFunctionBegin;
    1599:   PetscCall(PetscOptionsGetBool(((PetscObject)B)->options, ((PetscObject)B)->prefix, "-mat_no_unroll", &flg, NULL));
    1600:   if (flg) bs = 8;

    1602:   if (!natural) {
    1603:     switch (bs) {
    1604:     case 1:
    1605:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace;
    1606:       break;
    1607:     case 2:
    1608:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2;
    1609:       break;
    1610:     case 3:
    1611:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3;
    1612:       break;
    1613:     case 4:
    1614:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4;
    1615:       break;
    1616:     case 5:
    1617:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5;
    1618:       break;
    1619:     case 6:
    1620:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6;
    1621:       break;
    1622:     case 7:
    1623:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7;
    1624:       break;
    1625:     default:
    1626:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N;
    1627:       break;
    1628:     }
    1629:   } else {
    1630:     switch (bs) {
    1631:     case 1:
    1632:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace;
    1633:       break;
    1634:     case 2:
    1635:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering;
    1636:       break;
    1637:     case 3:
    1638:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering;
    1639:       break;
    1640:     case 4:
    1641:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_4_NaturalOrdering;
    1642:       break;
    1643:     case 5:
    1644:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering;
    1645:       break;
    1646:     case 6:
    1647:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_6_NaturalOrdering;
    1648:       break;
    1649:     case 7:
    1650:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_7_NaturalOrdering;
    1651:       break;
    1652:     default:
    1653:       B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering;
    1654:       break;
    1655:     }
    1656:   }
    1657:   PetscFunctionReturn(PETSC_SUCCESS);
    1658: }

    1660: PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
    1661: PETSC_INTERN PetscErrorCode MatConvert_SeqSBAIJ_SeqBAIJ(Mat, MatType, MatReuse, Mat *);
    1662: static PetscErrorCode       MatFactorGetSolverType_petsc(Mat A, MatSolverType *type)
    1663: {
    1664:   PetscFunctionBegin;
    1665:   *type = MATSOLVERPETSC;
    1666:   PetscFunctionReturn(PETSC_SUCCESS);
    1667: }

    1669: PETSC_INTERN PetscErrorCode MatGetFactor_seqsbaij_petsc(Mat A, MatFactorType ftype, Mat *B)
    1670: {
    1671:   PetscInt n = A->rmap->n;

    1673:   PetscFunctionBegin;
    1674:   if (PetscDefined(USE_COMPLEX) && (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) && A->hermitian == PETSC_BOOL3_TRUE && A->symmetric != PETSC_BOOL3_TRUE) {
    1675:     PetscCall(PetscInfo(A, "Hermitian MAT_FACTOR_CHOLESKY or MAT_FACTOR_ICC are not supported. Use MAT_FACTOR_LU instead.\n"));
    1676:     *B = NULL;
    1677:     PetscFunctionReturn(PETSC_SUCCESS);
    1678:   }

    1680:   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B));
    1681:   PetscCall(MatSetSizes(*B, n, n, n, n));
    1682:   PetscCheck(ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC, PETSC_COMM_SELF, PETSC_ERR_SUP, "Factor type not supported");
    1683:   PetscCall(MatSetType(*B, MATSEQSBAIJ));
    1684:   PetscCall(MatSeqSBAIJSetPreallocation(*B, A->rmap->bs, MAT_SKIP_ALLOCATION, NULL));

    1686:   (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqSBAIJ;
    1687:   (*B)->ops->iccfactorsymbolic      = MatICCFactorSymbolic_SeqSBAIJ;
    1688:   PetscCall(PetscStrallocpy(MATORDERINGNATURAL, (char **)&(*B)->preferredordering[MAT_FACTOR_CHOLESKY]));
    1689:   PetscCall(PetscStrallocpy(MATORDERINGNATURAL, (char **)&(*B)->preferredordering[MAT_FACTOR_ICC]));

    1691:   (*B)->factortype     = ftype;
    1692:   (*B)->canuseordering = PETSC_TRUE;
    1693:   PetscCall(PetscFree((*B)->solvertype));
    1694:   PetscCall(PetscStrallocpy(MATSOLVERPETSC, &(*B)->solvertype));
    1695:   PetscCall(PetscObjectComposeFunction((PetscObject)*B, "MatFactorGetSolverType_C", MatFactorGetSolverType_petsc));
    1696:   PetscFunctionReturn(PETSC_SUCCESS);
    1697: }

    1699: /*@C
    1700:   MatSeqSBAIJGetArray - gives access to the array where the numerical data for a `MATSEQSBAIJ` matrix is stored

    1702:   Not Collective

    1704:   Input Parameter:
    1705: . A - a `MATSEQSBAIJ` matrix

    1707:   Output Parameter:
    1708: . array - pointer to the data

    1710:   Level: intermediate

    1712: .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatSeqSBAIJRestoreArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`
    1713: @*/
    1714: PetscErrorCode MatSeqSBAIJGetArray(Mat A, PetscScalar *array[])
    1715: {
    1716:   PetscFunctionBegin;
    1717:   PetscUseMethod(A, "MatSeqSBAIJGetArray_C", (Mat, PetscScalar **), (A, array));
    1718:   PetscFunctionReturn(PETSC_SUCCESS);
    1719: }

    1721: /*@C
    1722:   MatSeqSBAIJRestoreArray - returns access to the array where the numerical data for a `MATSEQSBAIJ` matrix is stored obtained by `MatSeqSBAIJGetArray()`

    1724:   Not Collective

    1726:   Input Parameters:
    1727: + A     - a `MATSEQSBAIJ` matrix
    1728: - array - pointer to the data

    1730:   Level: intermediate

    1732: .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatSeqSBAIJGetArray()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`
    1733: @*/
    1734: PetscErrorCode MatSeqSBAIJRestoreArray(Mat A, PetscScalar *array[])
    1735: {
    1736:   PetscFunctionBegin;
    1737:   PetscUseMethod(A, "MatSeqSBAIJRestoreArray_C", (Mat, PetscScalar **), (A, array));
    1738:   PetscFunctionReturn(PETSC_SUCCESS);
    1739: }

    1741: /*MC
    1742:   MATSEQSBAIJ - MATSEQSBAIJ = "seqsbaij" - A matrix type to be used for sequential symmetric block sparse matrices,
    1743:   based on block compressed sparse row format.  Only the upper triangular portion of the matrix is stored.

    1745:   For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
    1746:   can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`).

    1748:   Options Database Key:
    1749:   . -mat_type seqsbaij - sets the matrix type to "seqsbaij" during a call to `MatSetFromOptions()`

    1751:   Level: beginner

    1753:   Notes:
    1754:   By default if you insert values into the lower triangular part of the matrix they are simply ignored (since they are not
    1755:   stored and it is assumed they symmetric to the upper triangular). If you call `MatSetOption`(`Mat`,`MAT_IGNORE_LOWER_TRIANGULAR`,`PETSC_FALSE`) or use
    1756:   the options database `-mat_ignore_lower_triangular` false it will generate an error if you try to set a value in the lower triangular portion.

    1758:   The number of rows in the matrix must be less than or equal to the number of columns

    1760: .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatCreateSeqSBAIJ()`, `MatType`, `MATMPISBAIJ`
    1761: M*/
    1762: PETSC_EXTERN PetscErrorCode MatCreate_SeqSBAIJ(Mat B)
    1763: {
    1764:   Mat_SeqSBAIJ *b;
    1765:   PetscMPIInt   size;
    1766:   PetscBool     no_unroll = PETSC_FALSE, no_inode = PETSC_FALSE;

    1768:   PetscFunctionBegin;
    1769:   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
    1770:   PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Comm must be of size 1");

    1772:   PetscCall(PetscNew(&b));
    1773:   B->data   = (void *)b;
    1774:   B->ops[0] = MatOps_Values;

    1776:   B->ops->destroy    = MatDestroy_SeqSBAIJ;
    1777:   B->ops->view       = MatView_SeqSBAIJ;
    1778:   b->row             = NULL;
    1779:   b->icol            = NULL;
    1780:   b->reallocs        = 0;
    1781:   b->saved_values    = NULL;
    1782:   b->inode.limit     = 5;
    1783:   b->inode.max_limit = 5;

    1785:   b->roworiented        = PETSC_TRUE;
    1786:   b->nonew              = 0;
    1787:   b->diag               = NULL;
    1788:   b->solve_work         = NULL;
    1789:   b->mult_work          = NULL;
    1790:   B->spptr              = NULL;
    1791:   B->info.nz_unneeded   = (PetscReal)b->maxnz * b->bs2;
    1792:   b->keepnonzeropattern = PETSC_FALSE;

    1794:   b->inew    = NULL;
    1795:   b->jnew    = NULL;
    1796:   b->anew    = NULL;
    1797:   b->a2anew  = NULL;
    1798:   b->permute = PETSC_FALSE;

    1800:   b->ignore_ltriangular = PETSC_TRUE;

    1802:   PetscCall(PetscOptionsGetBool(((PetscObject)B)->options, ((PetscObject)B)->prefix, "-mat_ignore_lower_triangular", &b->ignore_ltriangular, NULL));

    1804:   b->getrow_utriangular = PETSC_FALSE;

    1806:   PetscCall(PetscOptionsGetBool(((PetscObject)B)->options, ((PetscObject)B)->prefix, "-mat_getrow_uppertriangular", &b->getrow_utriangular, NULL));

    1808:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJGetArray_C", MatSeqSBAIJGetArray_SeqSBAIJ));
    1809:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJRestoreArray_C", MatSeqSBAIJRestoreArray_SeqSBAIJ));
    1810:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSBAIJ));
    1811:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSBAIJ));
    1812:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJSetColumnIndices_C", MatSeqSBAIJSetColumnIndices_SeqSBAIJ));
    1813:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsbaij_seqaij_C", MatConvert_SeqSBAIJ_SeqAIJ));
    1814:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsbaij_seqbaij_C", MatConvert_SeqSBAIJ_SeqBAIJ));
    1815:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJSetPreallocation_C", MatSeqSBAIJSetPreallocation_SeqSBAIJ));
    1816:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSBAIJSetPreallocationCSR_C", MatSeqSBAIJSetPreallocationCSR_SeqSBAIJ));
    1817: #if defined(PETSC_HAVE_ELEMENTAL)
    1818:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsbaij_elemental_C", MatConvert_SeqSBAIJ_Elemental));
    1819: #endif
    1820: #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
    1821:   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
    1822: #endif

    1824:   B->symmetry_eternal            = PETSC_TRUE;
    1825:   B->structural_symmetry_eternal = PETSC_TRUE;
    1826:   B->symmetric                   = PETSC_BOOL3_TRUE;
    1827:   B->structurally_symmetric      = PETSC_BOOL3_TRUE;
    1828: #if !defined(PETSC_USE_COMPLEX)
    1829:   B->hermitian = PETSC_BOOL3_TRUE;
    1830: #endif

    1832:   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSBAIJ));

    1834:   PetscOptionsBegin(PetscObjectComm((PetscObject)B), ((PetscObject)B)->prefix, "Options for SEQSBAIJ matrix", "Mat");
    1835:   PetscCall(PetscOptionsBool("-mat_no_unroll", "Do not optimize for inodes (slower)", NULL, no_unroll, &no_unroll, NULL));
    1836:   if (no_unroll) PetscCall(PetscInfo(B, "Not using Inode routines due to -mat_no_unroll\n"));
    1837:   PetscCall(PetscOptionsBool("-mat_no_inode", "Do not optimize for inodes (slower)", NULL, no_inode, &no_inode, NULL));
    1838:   if (no_inode) PetscCall(PetscInfo(B, "Not using Inode routines due to -mat_no_inode\n"));
    1839:   PetscCall(PetscOptionsInt("-mat_inode_limit", "Do not use inodes larger than this value", NULL, b->inode.limit, &b->inode.limit, NULL));
    1840:   PetscOptionsEnd();
    1841:   b->inode.use = (PetscBool)(!(no_unroll || no_inode));
    1842:   if (b->inode.limit > b->inode.max_limit) b->inode.limit = b->inode.max_limit;
    1843:   PetscFunctionReturn(PETSC_SUCCESS);
    1844: }

    1846: /*@
    1847:   MatSeqSBAIJSetPreallocation - Creates a sparse symmetric matrix in block AIJ (block
    1848:   compressed row) `MATSEQSBAIJ` format.  For good matrix assembly performance the
    1849:   user should preallocate the matrix storage by setting the parameter `nz`
    1850:   (or the array `nnz`).

    1852:   Collective

    1854:   Input Parameters:
    1855: + B   - the symmetric matrix
    1856: . bs  - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
    1857:         blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
    1858: . nz  - number of block nonzeros per block row (same for all rows)
    1859: - nnz - array containing the number of block nonzeros in the upper triangular plus
    1860:         diagonal portion of each block (possibly different for each block row) or `NULL`

    1862:   Options Database Keys:
    1863: + -mat_no_unroll  - uses code that does not unroll the loops in the block calculations (much slower)
    1864: - -mat_block_size - size of the blocks to use (only works if a negative bs is passed in

    1866:   Level: intermediate

    1868:   Notes:
    1869:   Specify the preallocated storage with either `nz` or `nnz` (not both).
    1870:   Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory
    1871:   allocation.  See [Sparse Matrices](sec_matsparse) for details.

    1873:   You can call `MatGetInfo()` to get information on how effective the preallocation was;
    1874:   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
    1875:   You can also run with the option `-info` and look for messages with the string
    1876:   malloc in them to see if additional memory allocation was needed.

    1878:   If the `nnz` parameter is given then the `nz` parameter is ignored

    1880: .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATSEQSBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateSBAIJ()`
    1881: @*/
    1882: PetscErrorCode MatSeqSBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt nz, const PetscInt nnz[])
    1883: {
    1884:   PetscFunctionBegin;
    1888:   PetscTryMethod(B, "MatSeqSBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[]), (B, bs, nz, nnz));
    1889:   PetscFunctionReturn(PETSC_SUCCESS);
    1890: }

    1892: /*@C
    1893:   MatSeqSBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATSEQSBAIJ` format using the given nonzero structure and (optional) numerical values

    1895:   Input Parameters:
    1896: + B  - the matrix
    1897: . bs - size of block, the blocks are ALWAYS square.
    1898: . i  - the indices into `j` for the start of each local row (indices start with zero)
    1899: . j  - the column indices for each local row (indices start with zero) these must be sorted for each row
    1900: - v  - optional values in the matrix, use `NULL` if not provided

    1902:   Level: advanced

    1904:   Notes:
    1905:   The `i`,`j`,`v` values are COPIED with this routine; to avoid the copy use `MatCreateSeqSBAIJWithArrays()`

    1907:   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
    1908:   may want to use the default `MAT_ROW_ORIENTED` = `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
    1909:   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
    1910:   `MAT_ROW_ORIENTED` = `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
    1911:   block column and the second index is over columns within a block.

    1913:   Any entries provided that lie below the diagonal are ignored

    1915:   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
    1916:   and usually the numerical values as well

    1918: .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValuesBlocked()`, `MatSeqSBAIJSetPreallocation()`
    1919: @*/
    1920: PetscErrorCode MatSeqSBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
    1921: {
    1922:   PetscFunctionBegin;
    1926:   PetscTryMethod(B, "MatSeqSBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
    1927:   PetscFunctionReturn(PETSC_SUCCESS);
    1928: }

    1930: /*@
    1931:   MatCreateSeqSBAIJ - Creates a sparse symmetric matrix in (block
    1932:   compressed row) `MATSEQSBAIJ` format.  For good matrix assembly performance the
    1933:   user should preallocate the matrix storage by setting the parameter `nz`
    1934:   (or the array `nnz`).

    1936:   Collective

    1938:   Input Parameters:
    1939: + comm - MPI communicator, set to `PETSC_COMM_SELF`
    1940: . bs   - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
    1941:           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
    1942: . m    - number of rows
    1943: . n    - number of columns
    1944: . nz   - number of block nonzeros per block row (same for all rows)
    1945: - nnz  - array containing the number of block nonzeros in the upper triangular plus
    1946:          diagonal portion of each block (possibly different for each block row) or `NULL`

    1948:   Output Parameter:
    1949: . A - the symmetric matrix

    1951:   Options Database Keys:
    1952: + -mat_no_unroll  - uses code that does not unroll the loops in the block calculations (much slower)
    1953: - -mat_block_size - size of the blocks to use

    1955:   Level: intermediate

    1957:   Notes:
    1958:   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
    1959:   MatXXXXSetPreallocation() paradigm instead of this routine directly.
    1960:   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]

    1962:   The number of rows and columns must be divisible by blocksize.
    1963:   This matrix type does not support complex Hermitian operation.

    1965:   Specify the preallocated storage with either `nz` or `nnz` (not both).
    1966:   Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory
    1967:   allocation.  See [Sparse Matrices](sec_matsparse) for details.

    1969:   If the `nnz` parameter is given then the `nz` parameter is ignored

    1971: .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATSEQSBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateSBAIJ()`
    1972: @*/
    1973: PetscErrorCode MatCreateSeqSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt nz, const PetscInt nnz[], Mat *A)
    1974: {
    1975:   PetscFunctionBegin;
    1976:   PetscCall(MatCreate(comm, A));
    1977:   PetscCall(MatSetSizes(*A, m, n, m, n));
    1978:   PetscCall(MatSetType(*A, MATSEQSBAIJ));
    1979:   PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, nz, (PetscInt *)nnz));
    1980:   PetscFunctionReturn(PETSC_SUCCESS);
    1981: }

    1983: PetscErrorCode MatDuplicate_SeqSBAIJ(Mat A, MatDuplicateOption cpvalues, Mat *B)
    1984: {
    1985:   Mat           C;
    1986:   Mat_SeqSBAIJ *c, *a  = (Mat_SeqSBAIJ *)A->data;
    1987:   PetscInt      i, mbs = a->mbs, nz = a->nz, bs2 = a->bs2;

    1989:   PetscFunctionBegin;
    1990:   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Cannot duplicate unassembled matrix");
    1991:   PetscCheck(a->i[mbs] == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupt matrix");

    1993:   *B = NULL;
    1994:   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &C));
    1995:   PetscCall(MatSetSizes(C, A->rmap->N, A->cmap->n, A->rmap->N, A->cmap->n));
    1996:   PetscCall(MatSetBlockSizesFromMats(C, A, A));
    1997:   PetscCall(MatSetType(C, MATSEQSBAIJ));
    1998:   c = (Mat_SeqSBAIJ *)C->data;

    2000:   C->preallocated       = PETSC_TRUE;
    2001:   C->factortype         = A->factortype;
    2002:   c->row                = NULL;
    2003:   c->icol               = NULL;
    2004:   c->saved_values       = NULL;
    2005:   c->keepnonzeropattern = a->keepnonzeropattern;
    2006:   C->assembled          = PETSC_TRUE;

    2008:   PetscCall(PetscLayoutReference(A->rmap, &C->rmap));
    2009:   PetscCall(PetscLayoutReference(A->cmap, &C->cmap));
    2010:   c->bs2 = a->bs2;
    2011:   c->mbs = a->mbs;
    2012:   c->nbs = a->nbs;

    2014:   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
    2015:     c->imax           = a->imax;
    2016:     c->ilen           = a->ilen;
    2017:     c->free_imax_ilen = PETSC_FALSE;
    2018:   } else {
    2019:     PetscCall(PetscMalloc2(mbs + 1, &c->imax, mbs + 1, &c->ilen));
    2020:     for (i = 0; i < mbs; i++) {
    2021:       c->imax[i] = a->imax[i];
    2022:       c->ilen[i] = a->ilen[i];
    2023:     }
    2024:     c->free_imax_ilen = PETSC_TRUE;
    2025:   }

    2027:   /* allocate the matrix space */
    2028:   PetscCall(PetscShmgetAllocateArray(bs2 * nz, sizeof(PetscScalar), (void **)&c->a));
    2029:   c->free_a = PETSC_TRUE;
    2030:   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
    2031:     PetscCall(PetscArrayzero(c->a, bs2 * nz));
    2032:     c->i       = a->i;
    2033:     c->j       = a->j;
    2034:     c->free_ij = PETSC_FALSE;
    2035:     c->parent  = A;
    2036:     PetscCall(PetscObjectReference((PetscObject)A));
    2037:     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
    2038:     PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
    2039:   } else {
    2040:     PetscCall(PetscShmgetAllocateArray(nz, sizeof(PetscInt), (void **)&c->j));
    2041:     PetscCall(PetscShmgetAllocateArray(mbs + 1, sizeof(PetscInt), (void **)&c->i));
    2042:     PetscCall(PetscArraycpy(c->i, a->i, mbs + 1));
    2043:     c->free_ij = PETSC_TRUE;
    2044:   }
    2045:   if (mbs > 0) {
    2046:     if (cpvalues != MAT_SHARE_NONZERO_PATTERN) PetscCall(PetscArraycpy(c->j, a->j, nz));
    2047:     if (cpvalues == MAT_COPY_VALUES) {
    2048:       PetscCall(PetscArraycpy(c->a, a->a, bs2 * nz));
    2049:     } else {
    2050:       PetscCall(PetscArrayzero(c->a, bs2 * nz));
    2051:     }
    2052:     if (a->jshort) {
    2053:       /* cannot share jshort, it is reallocated in MatAssemblyEnd_SeqSBAIJ() */
    2054:       /* if the parent matrix is reassembled, this child matrix will never notice */
    2055:       PetscCall(PetscMalloc1(nz, &c->jshort));
    2056:       PetscCall(PetscArraycpy(c->jshort, a->jshort, nz));

    2058:       c->free_jshort = PETSC_TRUE;
    2059:     }
    2060:   }

    2062:   c->roworiented = a->roworiented;
    2063:   c->nonew       = a->nonew;
    2064:   c->nz          = a->nz;
    2065:   c->maxnz       = a->nz; /* Since we allocate exactly the right amount */
    2066:   c->solve_work  = NULL;
    2067:   c->mult_work   = NULL;

    2069:   *B = C;
    2070:   PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist));
    2071:   PetscFunctionReturn(PETSC_SUCCESS);
    2072: }

    2074: /* Used for both SeqBAIJ and SeqSBAIJ matrices */
    2075: #define MatLoad_SeqSBAIJ_Binary MatLoad_SeqBAIJ_Binary

    2077: PetscErrorCode MatLoad_SeqSBAIJ(Mat mat, PetscViewer viewer)
    2078: {
    2079:   PetscBool isbinary;

    2081:   PetscFunctionBegin;
    2082:   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
    2083:   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
    2084:   PetscCall(MatLoad_SeqSBAIJ_Binary(mat, viewer));
    2085:   PetscFunctionReturn(PETSC_SUCCESS);
    2086: }

    2088: /*@
    2089:   MatCreateSeqSBAIJWithArrays - Creates an sequential `MATSEQSBAIJ` matrix using matrix elements
    2090:   (upper triangular entries in CSR format) provided by the user.

    2092:   Collective

    2094:   Input Parameters:
    2095: + comm - must be an MPI communicator of size 1
    2096: . bs   - size of block
    2097: . m    - number of rows
    2098: . n    - number of columns
    2099: . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
    2100: . j    - column indices
    2101: - a    - matrix values

    2103:   Output Parameter:
    2104: . mat - the matrix

    2106:   Level: advanced

    2108:   Notes:
    2109:   The `i`, `j`, and `a` arrays are not copied by this routine, the user must free these arrays
    2110:   once the matrix is destroyed

    2112:   You cannot set new nonzero locations into this matrix, that will generate an error.

    2114:   The `i` and `j` indices are 0 based

    2116:   When block size is greater than 1 the matrix values must be stored using the `MATSBAIJ` storage format. For block size of 1
    2117:   it is the regular CSR format excluding the lower triangular elements.

    2119: .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MatCreate()`, `MatCreateSBAIJ()`, `MatCreateSeqSBAIJ()`
    2120: @*/
    2121: PetscErrorCode MatCreateSeqSBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt i[], PetscInt j[], PetscScalar a[], Mat *mat)
    2122: {
    2123:   PetscInt      ii;
    2124:   Mat_SeqSBAIJ *sbaij;

    2126:   PetscFunctionBegin;
    2127:   PetscCheck(bs == 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "block size %" PetscInt_FMT " > 1 is not supported yet", bs);
    2128:   PetscCheck(m == 0 || i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");

    2130:   PetscCall(MatCreate(comm, mat));
    2131:   PetscCall(MatSetSizes(*mat, m, n, m, n));
    2132:   PetscCall(MatSetType(*mat, MATSEQSBAIJ));
    2133:   PetscCall(MatSeqSBAIJSetPreallocation(*mat, bs, MAT_SKIP_ALLOCATION, NULL));
    2134:   sbaij = (Mat_SeqSBAIJ *)(*mat)->data;
    2135:   PetscCall(PetscMalloc2(m, &sbaij->imax, m, &sbaij->ilen));

    2137:   sbaij->i = i;
    2138:   sbaij->j = j;
    2139:   sbaij->a = a;

    2141:   sbaij->nonew          = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
    2142:   sbaij->free_a         = PETSC_FALSE;
    2143:   sbaij->free_ij        = PETSC_FALSE;
    2144:   sbaij->free_imax_ilen = PETSC_TRUE;

    2146:   for (ii = 0; ii < m; ii++) {
    2147:     sbaij->ilen[ii] = sbaij->imax[ii] = i[ii + 1] - i[ii];
    2148:     PetscCheck(i[ii + 1] >= i[ii], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row length in i (row indices) row = %" PetscInt_FMT " length = %" PetscInt_FMT, ii, i[ii + 1] - i[ii]);
    2149:   }
    2150:   if (PetscDefined(USE_DEBUG)) {
    2151:     for (ii = 0; ii < sbaij->i[m]; ii++) {
    2152:       PetscCheck(j[ii] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative column index at location = %" PetscInt_FMT " index = %" PetscInt_FMT, ii, j[ii]);
    2153:       PetscCheck(j[ii] < n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index too large at location = %" PetscInt_FMT " index = %" PetscInt_FMT, ii, j[ii]);
    2154:     }
    2155:   }

    2157:   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
    2158:   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
    2159:   PetscFunctionReturn(PETSC_SUCCESS);
    2160: }

    2162: PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqSBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
    2163: {
    2164:   PetscFunctionBegin;
    2165:   PetscCall(MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(comm, inmat, n, scall, outmat));
    2166:   PetscFunctionReturn(PETSC_SUCCESS);
    2167: }