Actual source code: jp.c

      1: #include <../src/mat/impls/aij/mpi/mpiaij.h>
      2: #include <petscsf.h>

      4: typedef struct {
      5:   PetscSF    sf;
      6:   PetscReal *dwts, *owts;
      7:   PetscInt  *dmask, *omask, *cmask;
      8:   PetscBool  local;
      9: } MC_JP;

     11: static PetscErrorCode MatColoringDestroy_JP(MatColoring mc)
     12: {
     13:   PetscFunctionBegin;
     14:   PetscCall(PetscFree(mc->data));
     15:   PetscFunctionReturn(PETSC_SUCCESS);
     16: }

     18: static PetscErrorCode MatColoringSetFromOptions_JP(MatColoring mc, PetscOptionItems PetscOptionsObject)
     19: {
     20:   MC_JP *jp = (MC_JP *)mc->data;

     22:   PetscFunctionBegin;
     23:   PetscOptionsHeadBegin(PetscOptionsObject, "JP options");
     24:   PetscCall(PetscOptionsBool("-mat_coloring_jp_local", "Do an initial coloring of local columns", "", jp->local, &jp->local, NULL));
     25:   PetscOptionsHeadEnd();
     26:   PetscFunctionReturn(PETSC_SUCCESS);
     27: }

     29: static PetscErrorCode MCJPGreatestWeight_Private(MatColoring mc, const PetscReal *weights, PetscReal *maxweights)
     30: {
     31:   MC_JP          *jp = (MC_JP *)mc->data;
     32:   Mat             G  = mc->mat, dG, oG;
     33:   PetscBool       isSeq, isMPI;
     34:   Mat_MPIAIJ     *aij;
     35:   Mat_SeqAIJ     *daij, *oaij;
     36:   PetscInt       *di, *oi, *dj, *oj;
     37:   PetscSF         sf = jp->sf;
     38:   PetscLayout     layout;
     39:   PetscInt        dn, on;
     40:   PetscInt        i, j, l;
     41:   PetscReal      *dwts = jp->dwts, *owts = jp->owts;
     42:   PetscInt        ncols;
     43:   const PetscInt *cols;

     45:   PetscFunctionBegin;
     46:   PetscCall(PetscObjectTypeCompare((PetscObject)G, MATSEQAIJ, &isSeq));
     47:   PetscCall(PetscObjectTypeCompare((PetscObject)G, MATMPIAIJ, &isMPI));
     48:   PetscCheck(isSeq || isMPI, PetscObjectComm((PetscObject)G), PETSC_ERR_ARG_WRONGSTATE, "MatColoringDegrees requires an MPI/SEQAIJ Matrix");

     50:   /* get the inner matrix nonzero structure */
     51:   oG = NULL;
     52:   oi = NULL;
     53:   oj = NULL;
     54:   if (isMPI) {
     55:     aij  = (Mat_MPIAIJ *)G->data;
     56:     dG   = aij->A;
     57:     oG   = aij->B;
     58:     daij = (Mat_SeqAIJ *)dG->data;
     59:     oaij = (Mat_SeqAIJ *)oG->data;
     60:     di   = daij->i;
     61:     dj   = daij->j;
     62:     oi   = oaij->i;
     63:     oj   = oaij->j;
     64:     PetscCall(MatGetSize(oG, &dn, &on));
     65:     if (!sf) {
     66:       PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)mc), &sf));
     67:       PetscCall(MatGetLayouts(G, &layout, NULL));
     68:       PetscCall(PetscSFSetGraphLayout(sf, layout, on, NULL, PETSC_COPY_VALUES, aij->garray));
     69:       jp->sf = sf;
     70:     }
     71:   } else {
     72:     dG = G;
     73:     PetscCall(MatGetSize(dG, NULL, &dn));
     74:     daij = (Mat_SeqAIJ *)dG->data;
     75:     di   = daij->i;
     76:     dj   = daij->j;
     77:   }
     78:   /* set up the distance-zero weights */
     79:   if (!dwts) {
     80:     PetscCall(PetscMalloc1(dn, &dwts));
     81:     jp->dwts = dwts;
     82:     if (oG) {
     83:       PetscCall(PetscMalloc1(on, &owts));
     84:       jp->owts = owts;
     85:     }
     86:   }
     87:   for (i = 0; i < dn; i++) {
     88:     maxweights[i] = weights[i];
     89:     dwts[i]       = maxweights[i];
     90:   }
     91:   /* get the off-diagonal weights */
     92:   if (oG) {
     93:     PetscCall(PetscLogEventBegin(MATCOLORING_Comm, mc, 0, 0, 0));
     94:     PetscCall(PetscSFBcastBegin(sf, MPIU_REAL, dwts, owts, MPI_REPLACE));
     95:     PetscCall(PetscSFBcastEnd(sf, MPIU_REAL, dwts, owts, MPI_REPLACE));
     96:     PetscCall(PetscLogEventEnd(MATCOLORING_Comm, mc, 0, 0, 0));
     97:   }
     98:   /* check for the maximum out to the distance of the coloring */
     99:   for (l = 0; l < mc->dist; l++) {
    100:     /* check for on-diagonal greater weights */
    101:     for (i = 0; i < dn; i++) {
    102:       ncols = di[i + 1] - di[i];
    103:       cols  = &(dj[di[i]]);
    104:       for (j = 0; j < ncols; j++) {
    105:         if (dwts[cols[j]] > maxweights[i]) maxweights[i] = dwts[cols[j]];
    106:       }
    107:       /* check for off-diagonal greater weights */
    108:       if (oG) {
    109:         ncols = oi[i + 1] - oi[i];
    110:         cols  = &(oj[oi[i]]);
    111:         for (j = 0; j < ncols; j++) {
    112:           if (owts[cols[j]] > maxweights[i]) maxweights[i] = owts[cols[j]];
    113:         }
    114:       }
    115:     }
    116:     if (l < mc->dist - 1) {
    117:       for (i = 0; i < dn; i++) dwts[i] = maxweights[i];
    118:       if (oG) {
    119:         PetscCall(PetscLogEventBegin(MATCOLORING_Comm, mc, 0, 0, 0));
    120:         PetscCall(PetscSFBcastBegin(sf, MPIU_REAL, dwts, owts, MPI_REPLACE));
    121:         PetscCall(PetscSFBcastEnd(sf, MPIU_REAL, dwts, owts, MPI_REPLACE));
    122:         PetscCall(PetscLogEventEnd(MATCOLORING_Comm, mc, 0, 0, 0));
    123:       }
    124:     }
    125:   }
    126:   PetscFunctionReturn(PETSC_SUCCESS);
    127: }

    129: static PetscErrorCode MCJPInitialLocalColor_Private(MatColoring mc, PetscInt *lperm, ISColoringValue *colors)
    130: {
    131:   PetscInt        j, i, s, e, n, bidx, cidx, idx, dist, distance = mc->dist;
    132:   Mat             G = mc->mat, dG, oG;
    133:   PetscInt       *seen;
    134:   PetscInt       *idxbuf;
    135:   PetscBool      *boundary;
    136:   PetscInt       *distbuf;
    137:   PetscInt       *colormask;
    138:   PetscInt        ncols;
    139:   const PetscInt *cols;
    140:   PetscBool       isSeq, isMPI;
    141:   Mat_MPIAIJ     *aij;
    142:   Mat_SeqAIJ     *daij, *oaij;
    143:   PetscInt       *di, *dj, dn;
    144:   PetscInt       *oi;

    146:   PetscFunctionBegin;
    147:   PetscCall(PetscLogEventBegin(MATCOLORING_Local, mc, 0, 0, 0));
    148:   PetscCall(MatGetOwnershipRange(G, &s, &e));
    149:   n = e - s;
    150:   PetscCall(PetscObjectBaseTypeCompare((PetscObject)G, MATSEQAIJ, &isSeq));
    151:   PetscCall(PetscObjectTypeCompare((PetscObject)G, MATMPIAIJ, &isMPI));
    152:   PetscCheck(isSeq || isMPI, PetscObjectComm((PetscObject)G), PETSC_ERR_ARG_WRONGSTATE, "MatColoringDegrees requires an MPI/SEQAIJ Matrix");

    154:   /* get the inner matrix nonzero structure */
    155:   oG = NULL;
    156:   oi = NULL;
    157:   if (isMPI) {
    158:     aij  = (Mat_MPIAIJ *)G->data;
    159:     dG   = aij->A;
    160:     oG   = aij->B;
    161:     daij = (Mat_SeqAIJ *)dG->data;
    162:     oaij = (Mat_SeqAIJ *)oG->data;
    163:     di   = daij->i;
    164:     dj   = daij->j;
    165:     oi   = oaij->i;
    166:     PetscCall(MatGetSize(oG, &dn, NULL));
    167:   } else {
    168:     dG = G;
    169:     PetscCall(MatGetSize(dG, NULL, &dn));
    170:     daij = (Mat_SeqAIJ *)dG->data;
    171:     di   = daij->i;
    172:     dj   = daij->j;
    173:   }
    174:   PetscCall(PetscMalloc5(n, &colormask, n, &seen, n, &idxbuf, n, &distbuf, n, &boundary));
    175:   for (i = 0; i < dn; i++) {
    176:     seen[i]      = -1;
    177:     colormask[i] = -1;
    178:     boundary[i]  = PETSC_FALSE;
    179:   }
    180:   /* pass one -- figure out which ones are off-boundary in the distance-n sense */
    181:   if (oG) {
    182:     for (i = 0; i < dn; i++) {
    183:       bidx = -1;
    184:       /* nonempty off-diagonal, so this one is on the boundary */
    185:       if (oi[i] != oi[i + 1]) {
    186:         boundary[i] = PETSC_TRUE;
    187:         continue;
    188:       }
    189:       ncols = di[i + 1] - di[i];
    190:       cols  = &(dj[di[i]]);
    191:       for (j = 0; j < ncols; j++) {
    192:         bidx++;
    193:         seen[cols[j]] = i;
    194:         distbuf[bidx] = 1;
    195:         idxbuf[bidx]  = cols[j];
    196:       }
    197:       while (bidx >= 0) {
    198:         idx  = idxbuf[bidx];
    199:         dist = distbuf[bidx];
    200:         bidx--;
    201:         if (dist < distance) {
    202:           if (oi[idx + 1] != oi[idx]) {
    203:             boundary[i] = PETSC_TRUE;
    204:             break;
    205:           }
    206:           ncols = di[idx + 1] - di[idx];
    207:           cols  = &(dj[di[idx]]);
    208:           for (j = 0; j < ncols; j++) {
    209:             if (seen[cols[j]] != i) {
    210:               bidx++;
    211:               seen[cols[j]] = i;
    212:               idxbuf[bidx]  = cols[j];
    213:               distbuf[bidx] = dist + 1;
    214:             }
    215:           }
    216:         }
    217:       }
    218:     }
    219:     for (i = 0; i < dn; i++) seen[i] = -1;
    220:   }
    221:   /* pass two -- color it by looking at nearby vertices and building a mask */
    222:   for (i = 0; i < dn; i++) {
    223:     cidx = lperm[i];
    224:     if (!boundary[cidx]) {
    225:       bidx  = -1;
    226:       ncols = di[cidx + 1] - di[cidx];
    227:       cols  = &(dj[di[cidx]]);
    228:       for (j = 0; j < ncols; j++) {
    229:         bidx++;
    230:         seen[cols[j]] = cidx;
    231:         distbuf[bidx] = 1;
    232:         idxbuf[bidx]  = cols[j];
    233:       }
    234:       while (bidx >= 0) {
    235:         idx  = idxbuf[bidx];
    236:         dist = distbuf[bidx];
    237:         bidx--;
    238:         /* mask this color */
    239:         if (colors[idx] < IS_COLORING_MAX) colormask[colors[idx]] = cidx;
    240:         if (dist < distance) {
    241:           ncols = di[idx + 1] - di[idx];
    242:           cols  = &(dj[di[idx]]);
    243:           for (j = 0; j < ncols; j++) {
    244:             if (seen[cols[j]] != cidx) {
    245:               bidx++;
    246:               seen[cols[j]] = cidx;
    247:               idxbuf[bidx]  = cols[j];
    248:               distbuf[bidx] = dist + 1;
    249:             }
    250:           }
    251:         }
    252:       }
    253:       /* find the lowest untaken color */
    254:       for (j = 0; j < n; j++) {
    255:         if (colormask[j] != cidx || j >= mc->maxcolors) {
    256:           PetscCall(ISColoringValueCast(j, &colors[cidx]));
    257:           break;
    258:         }
    259:       }
    260:     }
    261:   }
    262:   PetscCall(PetscFree5(colormask, seen, idxbuf, distbuf, boundary));
    263:   PetscCall(PetscLogEventEnd(MATCOLORING_Local, mc, 0, 0, 0));
    264:   PetscFunctionReturn(PETSC_SUCCESS);
    265: }

    267: static PetscErrorCode MCJPMinColor_Private(MatColoring mc, ISColoringValue maxcolor, const ISColoringValue *colors, ISColoringValue *mincolors)
    268: {
    269:   MC_JP          *jp = (MC_JP *)mc->data;
    270:   Mat             G  = mc->mat, dG, oG;
    271:   PetscBool       isSeq, isMPI;
    272:   Mat_MPIAIJ     *aij;
    273:   Mat_SeqAIJ     *daij, *oaij;
    274:   PetscInt       *di, *oi, *dj, *oj;
    275:   PetscSF         sf = jp->sf;
    276:   PetscLayout     layout;
    277:   PetscInt        maskrounds, maskbase, maskradix;
    278:   PetscInt        dn, on;
    279:   PetscInt        i, j, l, k;
    280:   PetscInt       *dmask = jp->dmask, *omask = jp->omask, *cmask = jp->cmask, curmask;
    281:   PetscInt        ncols;
    282:   const PetscInt *cols;

    284:   PetscFunctionBegin;
    285:   maskradix  = sizeof(PetscInt) * 8;
    286:   maskrounds = 1 + maxcolor / (maskradix);
    287:   maskbase   = 0;
    288:   PetscCall(PetscObjectBaseTypeCompare((PetscObject)G, MATSEQAIJ, &isSeq));
    289:   PetscCall(PetscObjectTypeCompare((PetscObject)G, MATMPIAIJ, &isMPI));
    290:   PetscCheck(isSeq || isMPI, PetscObjectComm((PetscObject)G), PETSC_ERR_ARG_WRONGSTATE, "MatColoringDegrees requires an MPI/SEQAIJ Matrix");

    292:   /* get the inner matrix nonzero structure */
    293:   oG = NULL;
    294:   oi = NULL;
    295:   oj = NULL;
    296:   if (isMPI) {
    297:     aij  = (Mat_MPIAIJ *)G->data;
    298:     dG   = aij->A;
    299:     oG   = aij->B;
    300:     daij = (Mat_SeqAIJ *)dG->data;
    301:     oaij = (Mat_SeqAIJ *)oG->data;
    302:     di   = daij->i;
    303:     dj   = daij->j;
    304:     oi   = oaij->i;
    305:     oj   = oaij->j;
    306:     PetscCall(MatGetSize(oG, &dn, &on));
    307:     if (!sf) {
    308:       PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)mc), &sf));
    309:       PetscCall(MatGetLayouts(G, &layout, NULL));
    310:       PetscCall(PetscSFSetGraphLayout(sf, layout, on, NULL, PETSC_COPY_VALUES, aij->garray));
    311:       jp->sf = sf;
    312:     }
    313:   } else {
    314:     dG = G;
    315:     PetscCall(MatGetSize(dG, NULL, &dn));
    316:     daij = (Mat_SeqAIJ *)dG->data;
    317:     di   = daij->i;
    318:     dj   = daij->j;
    319:   }
    320:   for (i = 0; i < dn; i++) mincolors[i] = IS_COLORING_MAX;
    321:   /* set up the distance-zero mask */
    322:   if (!dmask) {
    323:     PetscCall(PetscMalloc1(dn, &dmask));
    324:     PetscCall(PetscMalloc1(dn, &cmask));
    325:     jp->cmask = cmask;
    326:     jp->dmask = dmask;
    327:     if (oG) {
    328:       PetscCall(PetscMalloc1(on, &omask));
    329:       jp->omask = omask;
    330:     }
    331:   }
    332:   /* the number of colors may be more than the number of bits in a PetscInt; take multiple rounds */
    333:   for (k = 0; k < maskrounds; k++) {
    334:     for (i = 0; i < dn; i++) {
    335:       cmask[i] = 0;
    336:       if (colors[i] < maskbase + maskradix && colors[i] >= maskbase) cmask[i] = 1 << (colors[i] - maskbase);
    337:       dmask[i] = cmask[i];
    338:     }
    339:     if (oG) {
    340:       PetscCall(PetscLogEventBegin(MATCOLORING_Comm, mc, 0, 0, 0));
    341:       PetscCall(PetscSFBcastBegin(sf, MPIU_INT, dmask, omask, MPI_REPLACE));
    342:       PetscCall(PetscSFBcastEnd(sf, MPIU_INT, dmask, omask, MPI_REPLACE));
    343:       PetscCall(PetscLogEventEnd(MATCOLORING_Comm, mc, 0, 0, 0));
    344:     }
    345:     /* fill in the mask out to the distance of the coloring */
    346:     for (l = 0; l < mc->dist; l++) {
    347:       /* fill in the on-and-off diagonal mask */
    348:       for (i = 0; i < dn; i++) {
    349:         ncols = di[i + 1] - di[i];
    350:         cols  = &(dj[di[i]]);
    351:         for (j = 0; j < ncols; j++) cmask[i] = cmask[i] | dmask[cols[j]];
    352:         if (oG) {
    353:           ncols = oi[i + 1] - oi[i];
    354:           cols  = &(oj[oi[i]]);
    355:           for (j = 0; j < ncols; j++) cmask[i] = cmask[i] | omask[cols[j]];
    356:         }
    357:       }
    358:       for (i = 0; i < dn; i++) dmask[i] = cmask[i];
    359:       if (l < mc->dist - 1) {
    360:         if (oG) {
    361:           PetscCall(PetscLogEventBegin(MATCOLORING_Comm, mc, 0, 0, 0));
    362:           PetscCall(PetscSFBcastBegin(sf, MPIU_INT, dmask, omask, MPI_REPLACE));
    363:           PetscCall(PetscSFBcastEnd(sf, MPIU_INT, dmask, omask, MPI_REPLACE));
    364:           PetscCall(PetscLogEventEnd(MATCOLORING_Comm, mc, 0, 0, 0));
    365:         }
    366:       }
    367:     }
    368:     /* read through the mask to see if we've discovered an acceptable color for any vertices in this round */
    369:     for (i = 0; i < dn; i++) {
    370:       if (mincolors[i] == IS_COLORING_MAX) {
    371:         curmask = dmask[i];
    372:         for (j = 0; j < maskradix; j++) {
    373:           if (curmask % 2 == 0) {
    374:             PetscCall(ISColoringValueCast(j + maskbase, &mincolors[i]));
    375:             break;
    376:           }
    377:           curmask = curmask >> 1;
    378:         }
    379:       }
    380:     }
    381:     /* do the next maskradix colors */
    382:     maskbase += maskradix;
    383:   }
    384:   for (i = 0; i < dn; i++) {
    385:     if (mincolors[i] == IS_COLORING_MAX) mincolors[i] = maxcolor + 1;
    386:   }
    387:   PetscFunctionReturn(PETSC_SUCCESS);
    388: }

    390: static PetscErrorCode MatColoringApply_JP(MatColoring mc, ISColoring *iscoloring)
    391: {
    392:   MC_JP           *jp = (MC_JP *)mc->data;
    393:   PetscInt         i, nadded, nadded_total, nadded_total_old, ntotal, n;
    394:   PetscInt         maxcolor_local = 0, maxcolor_global = 0, *lperm;
    395:   PetscMPIInt      rank;
    396:   PetscReal       *weights, *maxweights;
    397:   ISColoringValue *color, *mincolor;

    399:   PetscFunctionBegin;
    400:   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mc), &rank));
    401:   PetscCall(PetscLogEventBegin(MATCOLORING_Weights, mc, 0, 0, 0));
    402:   PetscCall(MatColoringCreateWeights(mc, &weights, &lperm));
    403:   PetscCall(PetscLogEventEnd(MATCOLORING_Weights, mc, 0, 0, 0));
    404:   PetscCall(MatGetSize(mc->mat, NULL, &ntotal));
    405:   PetscCall(MatGetLocalSize(mc->mat, NULL, &n));
    406:   PetscCall(PetscMalloc1(n, &maxweights));
    407:   PetscCall(PetscMalloc1(n, &color));
    408:   PetscCall(PetscMalloc1(n, &mincolor));
    409:   for (i = 0; i < n; i++) {
    410:     color[i]    = IS_COLORING_MAX;
    411:     mincolor[i] = 0;
    412:   }
    413:   nadded           = 0;
    414:   nadded_total     = 0;
    415:   nadded_total_old = 0;
    416:   /* compute purely local vertices */
    417:   if (jp->local) {
    418:     PetscCall(MCJPInitialLocalColor_Private(mc, lperm, color));
    419:     for (i = 0; i < n; i++) {
    420:       if (color[i] < IS_COLORING_MAX) {
    421:         nadded++;
    422:         weights[i] = -1;
    423:         if (color[i] > maxcolor_local) maxcolor_local = color[i];
    424:       }
    425:     }
    426:     PetscCallMPI(MPIU_Allreduce(&nadded, &nadded_total, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)mc)));
    427:     PetscCallMPI(MPIU_Allreduce(&maxcolor_local, &maxcolor_global, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)mc)));
    428:   }
    429:   while (nadded_total < ntotal) {
    430:     PetscCall(MCJPMinColor_Private(mc, (ISColoringValue)maxcolor_global, color, mincolor));
    431:     PetscCall(MCJPGreatestWeight_Private(mc, weights, maxweights));
    432:     for (i = 0; i < n; i++) {
    433:       /* choose locally maximal vertices; weights less than zero are omitted from the graph */
    434:       if (weights[i] >= maxweights[i] && weights[i] >= 0.) {
    435:         /* assign the minimum possible color */
    436:         if (mc->maxcolors > mincolor[i]) {
    437:           color[i] = mincolor[i];
    438:         } else {
    439:           color[i] = (ISColoringValue)mc->maxcolors;
    440:         }
    441:         if (color[i] > maxcolor_local) maxcolor_local = color[i];
    442:         weights[i] = -1.;
    443:         nadded++;
    444:       }
    445:     }
    446:     PetscCallMPI(MPIU_Allreduce(&maxcolor_local, &maxcolor_global, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)mc)));
    447:     PetscCallMPI(MPIU_Allreduce(&nadded, &nadded_total, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)mc)));
    448:     PetscCheck(nadded_total != nadded_total_old, PetscObjectComm((PetscObject)mc), PETSC_ERR_NOT_CONVERGED, "JP didn't make progress");
    449:     nadded_total_old = nadded_total;
    450:   }
    451:   PetscCall(PetscLogEventBegin(MATCOLORING_ISCreate, mc, 0, 0, 0));
    452:   PetscCall(ISColoringCreate(PetscObjectComm((PetscObject)mc), maxcolor_global + 1, n, color, PETSC_OWN_POINTER, iscoloring));
    453:   PetscCall(PetscLogEventEnd(MATCOLORING_ISCreate, mc, 0, 0, 0));
    454:   PetscCall(PetscFree(jp->dwts));
    455:   PetscCall(PetscFree(jp->dmask));
    456:   PetscCall(PetscFree(jp->cmask));
    457:   PetscCall(PetscFree(jp->owts));
    458:   PetscCall(PetscFree(jp->omask));
    459:   PetscCall(PetscFree(weights));
    460:   PetscCall(PetscFree(lperm));
    461:   PetscCall(PetscFree(maxweights));
    462:   PetscCall(PetscFree(mincolor));
    463:   PetscCall(PetscSFDestroy(&jp->sf));
    464:   PetscFunctionReturn(PETSC_SUCCESS);
    465: }

    467: /*MC
    468:   MATCOLORINGJP - Parallel Jones-Plassmann coloring {cite}`jp:pcolor`

    470:    Level: beginner

    472:    Options Database Key:
    473: .  -mat_coloring_jp_local - perform a local coloring before applying the parallel algorithm

    475:    Notes:
    476:    This method uses a parallel Luby-style coloring with weights to choose an independent set of processor
    477:    boundary vertices at each stage that may be assigned colors independently.

    479:    Supports both distance one and distance two colorings.

    481: .seealso: [](sec_fdmatrix), [](sec_matfactor), `MatColoringType`, `MatColoring`, `MatColoringCreate()`, `MatColoringSetType()`
    482: M*/
    483: PETSC_EXTERN PetscErrorCode MatColoringCreate_JP(MatColoring mc)
    484: {
    485:   MC_JP *jp;

    487:   PetscFunctionBegin;
    488:   PetscCall(PetscNew(&jp));
    489:   jp->sf                  = NULL;
    490:   jp->dmask               = NULL;
    491:   jp->omask               = NULL;
    492:   jp->cmask               = NULL;
    493:   jp->dwts                = NULL;
    494:   jp->owts                = NULL;
    495:   jp->local               = PETSC_TRUE;
    496:   mc->data                = jp;
    497:   mc->ops->apply          = MatColoringApply_JP;
    498:   mc->ops->view           = NULL;
    499:   mc->ops->destroy        = MatColoringDestroy_JP;
    500:   mc->ops->setfromoptions = MatColoringSetFromOptions_JP;
    501:   PetscFunctionReturn(PETSC_SUCCESS);
    502: }